Hb_001140_170

Information

Type -
Description -
Location Contig1140: 198390-202245
Sequence    

Annotation

kegg
ID cmo:103503454
description remorin
nr
ID XP_012090265.1
description PREDICTED: remorin [Jatropha curcas]
swissprot
ID P93788
description Remorin OS=Solanum tuberosum PE=1 SV=1
trembl
ID A0A067JEJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26117 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04189: 198472-201878 , PASA_asmbl_04190: 198571-201759 , PASA_asmbl_04192: 199325-199453
cDNA
(Sanger)
(ID:Location)		 017_N18.ab1: 198683-201878 , 019_J05.ab1: 198600-201878

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_170 0.0 - - PREDICTED: remorin [Jatropha curcas]
2 Hb_027445_030 0.1241733408 - - F-box/LRR-repeat protein, putative [Ricinus communis]
3 Hb_011828_010 0.1303799948 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
4 Hb_020586_010 0.1320674505 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
5 Hb_004097_090 0.1381013444 - - PREDICTED: uncharacterized protein LOC105634517 [Jatropha curcas]
6 Hb_014361_090 0.1397701352 - - acyl-CoA binding protein 3A [Vernicia fordii]
7 Hb_003894_010 0.1417417348 - - unnamed protein product [Vitis vinifera]
8 Hb_001882_020 0.1457334247 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
9 Hb_001195_090 0.1487424692 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
10 Hb_116702_010 0.1525535204 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
11 Hb_002129_020 0.153285355 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
12 Hb_005192_010 0.154307424 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
13 Hb_001976_060 0.1543785141 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
14 Hb_000138_060 0.1551632756 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
15 Hb_000684_310 0.1557795149 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
16 Hb_000445_150 0.1594545549 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
17 Hb_005116_140 0.1609413075 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
18 Hb_105033_010 0.1611336455 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Jatropha curcas]
19 Hb_007192_020 0.1624516377 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
20 Hb_026740_020 0.163506431 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_001140_170 Hb_001140_170 Hb_027445_030 Hb_027445_030 Hb_001140_170--Hb_027445_030 Hb_011828_010 Hb_011828_010 Hb_001140_170--Hb_011828_010 Hb_020586_010 Hb_020586_010 Hb_001140_170--Hb_020586_010 Hb_004097_090 Hb_004097_090 Hb_001140_170--Hb_004097_090 Hb_014361_090 Hb_014361_090 Hb_001140_170--Hb_014361_090 Hb_003894_010 Hb_003894_010 Hb_001140_170--Hb_003894_010 Hb_001882_020 Hb_001882_020 Hb_027445_030--Hb_001882_020 Hb_000665_190 Hb_000665_190 Hb_027445_030--Hb_000665_190 Hb_003994_300 Hb_003994_300 Hb_027445_030--Hb_003994_300 Hb_000922_060 Hb_000922_060 Hb_027445_030--Hb_000922_060 Hb_005977_100 Hb_005977_100 Hb_027445_030--Hb_005977_100 Hb_008406_180 Hb_008406_180 Hb_027445_030--Hb_008406_180 Hb_000473_120 Hb_000473_120 Hb_011828_010--Hb_000473_120 Hb_000138_060 Hb_000138_060 Hb_011828_010--Hb_000138_060 Hb_002289_150 Hb_002289_150 Hb_011828_010--Hb_002289_150 Hb_001969_140 Hb_001969_140 Hb_011828_010--Hb_001969_140 Hb_116702_010 Hb_116702_010 Hb_011828_010--Hb_116702_010 Hb_000271_220 Hb_000271_220 Hb_011828_010--Hb_000271_220 Hb_001195_310 Hb_001195_310 Hb_020586_010--Hb_001195_310 Hb_020586_010--Hb_001969_140 Hb_002129_020 Hb_002129_020 Hb_020586_010--Hb_002129_020 Hb_000003_310 Hb_000003_310 Hb_020586_010--Hb_000003_310 Hb_001216_110 Hb_001216_110 Hb_020586_010--Hb_001216_110 Hb_000679_040 Hb_000679_040 Hb_020586_010--Hb_000679_040 Hb_000300_510 Hb_000300_510 Hb_004097_090--Hb_000300_510 Hb_001627_040 Hb_001627_040 Hb_004097_090--Hb_001627_040 Hb_005192_010 Hb_005192_010 Hb_004097_090--Hb_005192_010 Hb_000417_170 Hb_000417_170 Hb_004097_090--Hb_000417_170 Hb_001421_090 Hb_001421_090 Hb_004097_090--Hb_001421_090 Hb_000120_860 Hb_000120_860 Hb_004097_090--Hb_000120_860 Hb_030565_050 Hb_030565_050 Hb_014361_090--Hb_030565_050 Hb_014361_090--Hb_011828_010 Hb_002559_030 Hb_002559_030 Hb_014361_090--Hb_002559_030 Hb_005941_030 Hb_005941_030 Hb_014361_090--Hb_005941_030 Hb_000071_160 Hb_000071_160 Hb_014361_090--Hb_000071_160 Hb_004899_340 Hb_004899_340 Hb_014361_090--Hb_004899_340 Hb_005116_140 Hb_005116_140 Hb_003894_010--Hb_005116_140 Hb_009252_030 Hb_009252_030 Hb_003894_010--Hb_009252_030 Hb_183086_030 Hb_183086_030 Hb_003894_010--Hb_183086_030 Hb_000418_020 Hb_000418_020 Hb_003894_010--Hb_000418_020 Hb_003894_010--Hb_020586_010 Hb_002367_110 Hb_002367_110 Hb_003894_010--Hb_002367_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.1897 82.2725 54.7837 248.392 37.6799 59.8563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.2909 17.1782 7.55624 35.294 190.389

CAGE analysis