Hb_006940_020

Information

Type -
Description -
Location Contig6940: 11418-17802
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID BAA22288.1
description polyprotein [Oryza australiensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O23864
description Polyprotein OS=Oryza australiensis PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006940_020 0.0 - - polyprotein [Oryza australiensis]
2 Hb_001221_360 0.1267796226 - - late embryogenesis abundant, putative [Ricinus communis]
3 Hb_010565_030 0.1497178366 - - hypothetical protein VITISV_006810 [Vitis vinifera]
4 Hb_003687_160 0.1522882402 - - Ran GTPase binding protein, putative [Ricinus communis]
5 Hb_003020_300 0.1555591 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000173_110 0.1568898174 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
7 Hb_004242_120 0.1591509132 - - Organic cation transporter, putative [Ricinus communis]
8 Hb_000997_140 0.1613192538 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
9 Hb_140389_010 0.1616005577 - - Ran GTPase binding protein, putative [Ricinus communis]
10 Hb_004109_130 0.1630740198 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
11 Hb_065525_070 0.163536552 - - unnamed protein product [Homo sapiens]
12 Hb_002030_050 0.1643692475 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
13 Hb_003077_130 0.1655585226 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
14 Hb_000574_320 0.1667062112 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
15 Hb_002013_030 0.1695503508 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
16 Hb_011472_050 0.1722589857 - - -
17 Hb_005542_010 0.1723992246 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
18 Hb_000084_140 0.1767885185 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
19 Hb_001213_040 0.1773486311 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
20 Hb_001250_020 0.1776478001 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006940_020 Hb_006940_020 Hb_001221_360 Hb_001221_360 Hb_006940_020--Hb_001221_360 Hb_010565_030 Hb_010565_030 Hb_006940_020--Hb_010565_030 Hb_003687_160 Hb_003687_160 Hb_006940_020--Hb_003687_160 Hb_003020_300 Hb_003020_300 Hb_006940_020--Hb_003020_300 Hb_000173_110 Hb_000173_110 Hb_006940_020--Hb_000173_110 Hb_004242_120 Hb_004242_120 Hb_006940_020--Hb_004242_120 Hb_000997_140 Hb_000997_140 Hb_001221_360--Hb_000997_140 Hb_001221_360--Hb_010565_030 Hb_003029_140 Hb_003029_140 Hb_001221_360--Hb_003029_140 Hb_140389_010 Hb_140389_010 Hb_001221_360--Hb_140389_010 Hb_007576_150 Hb_007576_150 Hb_001221_360--Hb_007576_150 Hb_005542_010 Hb_005542_010 Hb_010565_030--Hb_005542_010 Hb_011472_050 Hb_011472_050 Hb_010565_030--Hb_011472_050 Hb_010565_030--Hb_000173_110 Hb_011609_210 Hb_011609_210 Hb_010565_030--Hb_011609_210 Hb_000123_340 Hb_000123_340 Hb_010565_030--Hb_000123_340 Hb_002110_110 Hb_002110_110 Hb_010565_030--Hb_002110_110 Hb_003687_160--Hb_000123_340 Hb_003687_160--Hb_004242_120 Hb_000360_010 Hb_000360_010 Hb_003687_160--Hb_000360_010 Hb_004109_130 Hb_004109_130 Hb_003687_160--Hb_004109_130 Hb_011649_030 Hb_011649_030 Hb_003687_160--Hb_011649_030 Hb_127552_050 Hb_127552_050 Hb_003687_160--Hb_127552_050 Hb_000320_360 Hb_000320_360 Hb_003020_300--Hb_000320_360 Hb_000992_020 Hb_000992_020 Hb_003020_300--Hb_000992_020 Hb_007534_030 Hb_007534_030 Hb_003020_300--Hb_007534_030 Hb_000175_270 Hb_000175_270 Hb_003020_300--Hb_000175_270 Hb_003020_300--Hb_002110_110 Hb_000173_110--Hb_000123_340 Hb_001366_260 Hb_001366_260 Hb_000173_110--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_000173_110--Hb_000820_100 Hb_116784_020 Hb_116784_020 Hb_000173_110--Hb_116784_020 Hb_000173_110--Hb_011472_050 Hb_002030_050 Hb_002030_050 Hb_004242_120--Hb_002030_050 Hb_004242_120--Hb_000173_110 Hb_004242_120--Hb_011472_050 Hb_000574_320 Hb_000574_320 Hb_004242_120--Hb_000574_320 Hb_022693_080 Hb_022693_080 Hb_004242_120--Hb_022693_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0426722 0.192615 0.134687 0.0874767 0.0404677 0.0685042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0117397 0.027716 0 0.0878509 0.632851

CAGE analysis