Hb_007534_030

Information

Type -
Description -
Location Contig7534: 38606-42106
Sequence    

Annotation

kegg
ID rcu:RCOM_1556260
description Receptor protein kinase CLAVATA1 precursor, putative (EC:1.3.1.74)
nr
ID XP_012076101.1
description PREDICTED: receptor-like protein kinase [Jatropha curcas]
swissprot
ID P93194
description Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2
trembl
ID A0A067KEA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11923 PE=4 SV=1
Gene Ontology
ID GO:0016021
description receptor-like protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007534_030 0.0 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
2 Hb_003020_300 0.164289206 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012539_040 0.1730462974 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
4 Hb_000175_270 0.2144086909 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
5 Hb_140389_010 0.217177016 - - Ran GTPase binding protein, putative [Ricinus communis]
6 Hb_002768_080 0.217643727 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
7 Hb_161549_010 0.2206494534 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000254_110 0.2209290833 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
9 Hb_000665_070 0.2222899449 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Jatropha curcas]
10 Hb_005015_020 0.2230936049 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
11 Hb_004837_020 0.2248815273 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
12 Hb_004346_040 0.2260599335 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
13 Hb_001925_070 0.2269282718 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
14 Hb_003786_010 0.2272814659 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
15 Hb_011616_040 0.228225152 - - glucan water dikinase 3, partial [Manihot esculenta]
16 Hb_146420_010 0.2284285756 - - alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_000093_140 0.2319896511 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
18 Hb_000453_230 0.233479151 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_000992_020 0.2354315504 - - monoxygenase, putative [Ricinus communis]
20 Hb_001476_090 0.2358295334 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]

Gene co-expression network

sample Hb_007534_030 Hb_007534_030 Hb_003020_300 Hb_003020_300 Hb_007534_030--Hb_003020_300 Hb_012539_040 Hb_012539_040 Hb_007534_030--Hb_012539_040 Hb_000175_270 Hb_000175_270 Hb_007534_030--Hb_000175_270 Hb_140389_010 Hb_140389_010 Hb_007534_030--Hb_140389_010 Hb_002768_080 Hb_002768_080 Hb_007534_030--Hb_002768_080 Hb_161549_010 Hb_161549_010 Hb_007534_030--Hb_161549_010 Hb_000320_360 Hb_000320_360 Hb_003020_300--Hb_000320_360 Hb_006940_020 Hb_006940_020 Hb_003020_300--Hb_006940_020 Hb_000992_020 Hb_000992_020 Hb_003020_300--Hb_000992_020 Hb_003020_300--Hb_000175_270 Hb_002110_110 Hb_002110_110 Hb_003020_300--Hb_002110_110 Hb_004324_120 Hb_004324_120 Hb_012539_040--Hb_004324_120 Hb_005015_020 Hb_005015_020 Hb_012539_040--Hb_005015_020 Hb_004346_040 Hb_004346_040 Hb_012539_040--Hb_004346_040 Hb_012539_040--Hb_140389_010 Hb_000093_140 Hb_000093_140 Hb_012539_040--Hb_000093_140 Hb_000933_110 Hb_000933_110 Hb_012539_040--Hb_000933_110 Hb_187005_010 Hb_187005_010 Hb_000175_270--Hb_187005_010 Hb_001499_070 Hb_001499_070 Hb_000175_270--Hb_001499_070 Hb_000221_180 Hb_000221_180 Hb_000175_270--Hb_000221_180 Hb_014006_010 Hb_014006_010 Hb_000175_270--Hb_014006_010 Hb_019863_060 Hb_019863_060 Hb_000175_270--Hb_019863_060 Hb_000340_360 Hb_000340_360 Hb_000175_270--Hb_000340_360 Hb_006277_080 Hb_006277_080 Hb_140389_010--Hb_006277_080 Hb_000574_320 Hb_000574_320 Hb_140389_010--Hb_000574_320 Hb_140389_010--Hb_005015_020 Hb_140389_010--Hb_004324_120 Hb_005288_180 Hb_005288_180 Hb_140389_010--Hb_005288_180 Hb_010614_010 Hb_010614_010 Hb_002768_080--Hb_010614_010 Hb_001386_020 Hb_001386_020 Hb_002768_080--Hb_001386_020 Hb_004800_140 Hb_004800_140 Hb_002768_080--Hb_004800_140 Hb_000318_410 Hb_000318_410 Hb_002768_080--Hb_000318_410 Hb_005054_320 Hb_005054_320 Hb_002768_080--Hb_005054_320 Hb_000594_150 Hb_000594_150 Hb_002768_080--Hb_000594_150 Hb_027380_210 Hb_027380_210 Hb_161549_010--Hb_027380_210 Hb_000453_230 Hb_000453_230 Hb_161549_010--Hb_000453_230 Hb_000609_110 Hb_000609_110 Hb_161549_010--Hb_000609_110 Hb_005941_020 Hb_005941_020 Hb_161549_010--Hb_005941_020 Hb_000805_200 Hb_000805_200 Hb_161549_010--Hb_000805_200 Hb_000836_540 Hb_000836_540 Hb_161549_010--Hb_000836_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0169948 0.0643287 0.0606529 0.00839378 0.00530102 0.0200515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.01284 0 0 0.0240308 0.0864057

CAGE analysis