Hb_003291_030

Information

Type -
Description -
Location Contig3291: 55520-64780
Sequence    

Annotation

kegg
ID mdm:103454053
description uncharacterized LOC103454053
nr
ID AAT39297.2
description Gag-pol protein, putative [Solanum demissum]
swissprot
ID P05400
description Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3 SV=1
trembl
ID Q6L3M7
description Gag-pol protein, putative OS=Solanum demissum GN=SDM1_27t00008 PE=4 SV=2
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003291_030 0.0 - - Gag-pol protein, putative [Solanum demissum]
2 Hb_011649_030 0.0999723456 - - hypothetical protein [Vitis hybrid cultivar]
3 Hb_008484_020 0.1098184162 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
4 Hb_001946_130 0.1351622681 - - -
5 Hb_000574_330 0.1410854149 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
6 Hb_000352_060 0.148030336 - - RNA-directed DNA polymerase [Arachis hypogaea]
7 Hb_003687_160 0.1500282157 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_000092_060 0.1502524946 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
9 Hb_003540_070 0.1533966573 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
10 Hb_041813_040 0.1596321931 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
11 Hb_127552_050 0.1597877793 - - hypothetical protein VITISV_030752 [Vitis vinifera]
12 Hb_172486_010 0.1598048921 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_000123_340 0.1638795015 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
14 Hb_000011_440 0.1664042339 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
15 Hb_004374_090 0.1668488986 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
16 Hb_001385_070 0.1694816182 - - hypothetical protein VITISV_019194 [Vitis vinifera]
17 Hb_004312_020 0.1698397113 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000441_080 0.1727345366 - - calmodulin binding protein, putative [Ricinus communis]
19 Hb_023738_010 0.1733622635 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
20 Hb_004291_050 0.1744885806 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]

Gene co-expression network

sample Hb_003291_030 Hb_003291_030 Hb_011649_030 Hb_011649_030 Hb_003291_030--Hb_011649_030 Hb_008484_020 Hb_008484_020 Hb_003291_030--Hb_008484_020 Hb_001946_130 Hb_001946_130 Hb_003291_030--Hb_001946_130 Hb_000574_330 Hb_000574_330 Hb_003291_030--Hb_000574_330 Hb_000352_060 Hb_000352_060 Hb_003291_030--Hb_000352_060 Hb_003687_160 Hb_003687_160 Hb_003291_030--Hb_003687_160 Hb_011649_030--Hb_000352_060 Hb_001385_070 Hb_001385_070 Hb_011649_030--Hb_001385_070 Hb_127552_050 Hb_127552_050 Hb_011649_030--Hb_127552_050 Hb_041813_040 Hb_041813_040 Hb_011649_030--Hb_041813_040 Hb_011649_030--Hb_000574_330 Hb_172486_010 Hb_172486_010 Hb_008484_020--Hb_172486_010 Hb_003540_070 Hb_003540_070 Hb_008484_020--Hb_003540_070 Hb_008484_020--Hb_001946_130 Hb_008484_020--Hb_011649_030 Hb_007793_030 Hb_007793_030 Hb_008484_020--Hb_007793_030 Hb_001366_260 Hb_001366_260 Hb_001946_130--Hb_001366_260 Hb_007543_020 Hb_007543_020 Hb_001946_130--Hb_007543_020 Hb_001946_130--Hb_011649_030 Hb_000820_100 Hb_000820_100 Hb_001946_130--Hb_000820_100 Hb_000527_120 Hb_000527_120 Hb_001946_130--Hb_000527_120 Hb_000574_330--Hb_041813_040 Hb_000574_330--Hb_127552_050 Hb_000574_330--Hb_001385_070 Hb_000123_340 Hb_000123_340 Hb_000574_330--Hb_000123_340 Hb_004109_130 Hb_004109_130 Hb_000574_330--Hb_004109_130 Hb_116784_020 Hb_116784_020 Hb_000352_060--Hb_116784_020 Hb_001345_040 Hb_001345_040 Hb_000352_060--Hb_001345_040 Hb_000173_110 Hb_000173_110 Hb_000352_060--Hb_000173_110 Hb_067472_010 Hb_067472_010 Hb_000352_060--Hb_067472_010 Hb_001468_040 Hb_001468_040 Hb_000352_060--Hb_001468_040 Hb_003687_160--Hb_000123_340 Hb_004242_120 Hb_004242_120 Hb_003687_160--Hb_004242_120 Hb_000360_010 Hb_000360_010 Hb_003687_160--Hb_000360_010 Hb_003687_160--Hb_004109_130 Hb_003687_160--Hb_011649_030 Hb_003687_160--Hb_127552_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00349534 0.0539712 0.0448238 0.0472624 0 0.0153406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00791164 0 0 0.0369513 0.348133

CAGE analysis