Hb_000574_330

Information

Type -
Description -
Location Contig574: 317660-319774
Sequence    

Annotation

kegg
ID rcu:RCOM_0901430
description eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_012073132.1
description PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
swissprot
ID B0W2S0
description Clustered mitochondria protein homolog OS=Culex quinquefasciatus GN=CPIJ001445 PE=3 SV=1
trembl
ID A0A067KLN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06108 PE=4 SV=1
Gene Ontology
ID GO:0005829
description eukaryotic translation initiation factor 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49556: 309679-322135 , PASA_asmbl_49557: 318480-318762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_330 0.0 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
2 Hb_041813_040 0.0917612126 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
3 Hb_127552_050 0.1153095601 - - hypothetical protein VITISV_030752 [Vitis vinifera]
4 Hb_011649_030 0.1206363582 - - hypothetical protein [Vitis hybrid cultivar]
5 Hb_001385_070 0.1231592581 - - hypothetical protein VITISV_019194 [Vitis vinifera]
6 Hb_000123_340 0.1382573152 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
7 Hb_004109_130 0.1387691048 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
8 Hb_000352_060 0.1389729157 - - RNA-directed DNA polymerase [Arachis hypogaea]
9 Hb_003291_030 0.1410854149 - - Gag-pol protein, putative [Solanum demissum]
10 Hb_168031_020 0.1475933023 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
11 Hb_067472_010 0.1513172426 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
12 Hb_003687_160 0.1546405341 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_102602_020 0.1568637108 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
14 Hb_041813_060 0.1578717422 - - ribosomal protein L10 (mitochondrion) [Ricinus communis]
15 Hb_013420_060 0.1622418069 - - NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
16 Hb_010565_030 0.1628760436 - - hypothetical protein VITISV_006810 [Vitis vinifera]
17 Hb_001793_030 0.1631170212 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
18 Hb_000820_100 0.1631195374 - - RNA-directed DNA polymerase [Arachis hypogaea]
19 Hb_002030_050 0.1633736543 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
20 Hb_011472_050 0.1639730686 - - -

Gene co-expression network

sample Hb_000574_330 Hb_000574_330 Hb_041813_040 Hb_041813_040 Hb_000574_330--Hb_041813_040 Hb_127552_050 Hb_127552_050 Hb_000574_330--Hb_127552_050 Hb_011649_030 Hb_011649_030 Hb_000574_330--Hb_011649_030 Hb_001385_070 Hb_001385_070 Hb_000574_330--Hb_001385_070 Hb_000123_340 Hb_000123_340 Hb_000574_330--Hb_000123_340 Hb_004109_130 Hb_004109_130 Hb_000574_330--Hb_004109_130 Hb_041813_040--Hb_011649_030 Hb_102602_020 Hb_102602_020 Hb_041813_040--Hb_102602_020 Hb_000352_060 Hb_000352_060 Hb_041813_040--Hb_000352_060 Hb_041813_040--Hb_127552_050 Hb_067472_010 Hb_067472_010 Hb_041813_040--Hb_067472_010 Hb_127552_050--Hb_001385_070 Hb_127552_050--Hb_011649_030 Hb_127552_050--Hb_000123_340 Hb_004520_010 Hb_004520_010 Hb_127552_050--Hb_004520_010 Hb_011649_030--Hb_000352_060 Hb_003291_030 Hb_003291_030 Hb_011649_030--Hb_003291_030 Hb_011649_030--Hb_001385_070 Hb_001385_070--Hb_000123_340 Hb_001793_040 Hb_001793_040 Hb_001385_070--Hb_001793_040 Hb_001385_070--Hb_004520_010 Hb_000173_110 Hb_000173_110 Hb_000123_340--Hb_000173_110 Hb_000820_100 Hb_000820_100 Hb_000123_340--Hb_000820_100 Hb_007543_020 Hb_007543_020 Hb_000123_340--Hb_007543_020 Hb_010565_030 Hb_010565_030 Hb_000123_340--Hb_010565_030 Hb_005332_150 Hb_005332_150 Hb_004109_130--Hb_005332_150 Hb_000966_040 Hb_000966_040 Hb_004109_130--Hb_000966_040 Hb_020400_020 Hb_020400_020 Hb_004109_130--Hb_020400_020 Hb_065525_070 Hb_065525_070 Hb_004109_130--Hb_065525_070 Hb_000084_140 Hb_000084_140 Hb_004109_130--Hb_000084_140 Hb_000208_270 Hb_000208_270 Hb_004109_130--Hb_000208_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.835094 7.77202 5.79548 8.18958 1.12155 1.99957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.349939 0.196592 1.30361 6.57594 48.2991

CAGE analysis