Hb_027380_150

Information

Type -
Description -
Location Contig27380: 130018-133915
Sequence    

Annotation

kegg
ID rcu:RCOM_0485220
description hypothetical protein
nr
ID XP_002532979.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q0WQ57
description Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1 SV=1
trembl
ID B9T410
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0485220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28600: 130081-133956 , PASA_asmbl_28601: 130867-131989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000791_050 0.113140573 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
3 Hb_010050_020 0.1194356387 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
4 Hb_000776_040 0.1313732841 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X3 [Jatropha curcas]
5 Hb_021409_070 0.1378657491 - - PREDICTED: transcription factor bHLH157 isoform X1 [Jatropha curcas]
6 Hb_189003_070 0.1403337233 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
7 Hb_012807_150 0.141416869 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
8 Hb_006120_060 0.1417962763 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
9 Hb_001221_390 0.1422321016 - - Phospholipase C 4 precursor, putative [Ricinus communis]
10 Hb_000120_740 0.1430663757 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
11 Hb_000270_830 0.143257915 - - aldehyde dehydrogenase, putative [Ricinus communis]
12 Hb_034507_060 0.1434633523 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
13 Hb_004545_080 0.1440780352 - - protein with unknown function [Ricinus communis]
14 Hb_000012_400 0.1447054466 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
15 Hb_001105_130 0.1483699607 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
16 Hb_004522_030 0.1503349693 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
17 Hb_000527_080 0.1533395738 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
18 Hb_004317_010 0.1543704053 - - hypothetical protein CICLE_v10011038mg [Citrus clementina]
19 Hb_000357_070 0.1553139804 - - -
20 Hb_000283_140 0.1559466837 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_027380_150 Hb_027380_150 Hb_000791_050 Hb_000791_050 Hb_027380_150--Hb_000791_050 Hb_010050_020 Hb_010050_020 Hb_027380_150--Hb_010050_020 Hb_000776_040 Hb_000776_040 Hb_027380_150--Hb_000776_040 Hb_021409_070 Hb_021409_070 Hb_027380_150--Hb_021409_070 Hb_189003_070 Hb_189003_070 Hb_027380_150--Hb_189003_070 Hb_012807_150 Hb_012807_150 Hb_027380_150--Hb_012807_150 Hb_000318_170 Hb_000318_170 Hb_000791_050--Hb_000318_170 Hb_001221_390 Hb_001221_390 Hb_000791_050--Hb_001221_390 Hb_000737_010 Hb_000737_010 Hb_000791_050--Hb_000737_010 Hb_000791_050--Hb_010050_020 Hb_000438_010 Hb_000438_010 Hb_000791_050--Hb_000438_010 Hb_012760_090 Hb_012760_090 Hb_010050_020--Hb_012760_090 Hb_010050_020--Hb_001221_390 Hb_000622_330 Hb_000622_330 Hb_010050_020--Hb_000622_330 Hb_002641_160 Hb_002641_160 Hb_010050_020--Hb_002641_160 Hb_004522_030 Hb_004522_030 Hb_010050_020--Hb_004522_030 Hb_000012_400 Hb_000012_400 Hb_010050_020--Hb_000012_400 Hb_000203_070 Hb_000203_070 Hb_000776_040--Hb_000203_070 Hb_000776_040--Hb_000791_050 Hb_003929_190 Hb_003929_190 Hb_000776_040--Hb_003929_190 Hb_003540_120 Hb_003540_120 Hb_000776_040--Hb_003540_120 Hb_000834_180 Hb_000834_180 Hb_000776_040--Hb_000834_180 Hb_003740_020 Hb_003740_020 Hb_021409_070--Hb_003740_020 Hb_000566_010 Hb_000566_010 Hb_021409_070--Hb_000566_010 Hb_003680_220 Hb_003680_220 Hb_021409_070--Hb_003680_220 Hb_000007_090 Hb_000007_090 Hb_021409_070--Hb_000007_090 Hb_005665_090 Hb_005665_090 Hb_021409_070--Hb_005665_090 Hb_000414_080 Hb_000414_080 Hb_021409_070--Hb_000414_080 Hb_006615_230 Hb_006615_230 Hb_189003_070--Hb_006615_230 Hb_006736_050 Hb_006736_050 Hb_189003_070--Hb_006736_050 Hb_134014_010 Hb_134014_010 Hb_189003_070--Hb_134014_010 Hb_036388_010 Hb_036388_010 Hb_189003_070--Hb_036388_010 Hb_000417_380 Hb_000417_380 Hb_189003_070--Hb_000417_380 Hb_001119_070 Hb_001119_070 Hb_189003_070--Hb_001119_070 Hb_000283_140 Hb_000283_140 Hb_012807_150--Hb_000283_140 Hb_000271_220 Hb_000271_220 Hb_012807_150--Hb_000271_220 Hb_006120_060 Hb_006120_060 Hb_012807_150--Hb_006120_060 Hb_000603_020 Hb_000603_020 Hb_012807_150--Hb_000603_020 Hb_000327_360 Hb_000327_360 Hb_012807_150--Hb_000327_360 Hb_000638_060 Hb_000638_060 Hb_012807_150--Hb_000638_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13578 2.39264 4.86286 7.31173 0.292592 0.581482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.50334 0.354333 0.511665 3.38002 5.13007

CAGE analysis