Hb_021409_070

Information

Type -
Description -
Location Contig21409: 36718-45219
Sequence    

Annotation

kegg
ID pop:POPTR_0003s14480g
description POPTRDRAFT_757675; hypothetical protein
nr
ID XP_012086653.1
description PREDICTED: transcription factor bHLH157 isoform X1 [Jatropha curcas]
swissprot
ID Q9XIN0
description Transcription factor LHW OS=Arabidopsis thaliana GN=LHW PE=1 SV=1
trembl
ID A0A067K0E4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20395 PE=4 SV=1
Gene Ontology
ID GO:0046983
description serine threonine-protein kinase wnk- isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22113: 37738-39418 , PASA_asmbl_22114: 39798-45074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021409_070 0.0 - - PREDICTED: transcription factor bHLH157 isoform X1 [Jatropha curcas]
2 Hb_003740_020 0.0894892503 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
3 Hb_000566_010 0.0931853313 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
4 Hb_003680_220 0.1042146015 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
5 Hb_000007_090 0.1061139758 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
6 Hb_005665_090 0.106591596 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
7 Hb_000414_080 0.1101065781 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
8 Hb_008725_270 0.1131156047 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
9 Hb_008025_010 0.116380034 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
10 Hb_005357_110 0.1168168868 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
11 Hb_006120_060 0.116876521 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
12 Hb_000689_050 0.1187678932 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002942_230 0.1200271686 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
14 Hb_004545_080 0.1203999175 - - protein with unknown function [Ricinus communis]
15 Hb_002249_080 0.1205226919 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
16 Hb_000487_370 0.121716463 - - -
17 Hb_000375_300 0.1221704718 - - PREDICTED: cyanate hydratase [Jatropha curcas]
18 Hb_000996_080 0.1229995902 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
19 Hb_070624_010 0.1241148639 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
20 Hb_003687_080 0.1247421035 - - PREDICTED: casein kinase I-like [Jatropha curcas]

Gene co-expression network

sample Hb_021409_070 Hb_021409_070 Hb_003740_020 Hb_003740_020 Hb_021409_070--Hb_003740_020 Hb_000566_010 Hb_000566_010 Hb_021409_070--Hb_000566_010 Hb_003680_220 Hb_003680_220 Hb_021409_070--Hb_003680_220 Hb_000007_090 Hb_000007_090 Hb_021409_070--Hb_000007_090 Hb_005665_090 Hb_005665_090 Hb_021409_070--Hb_005665_090 Hb_000414_080 Hb_000414_080 Hb_021409_070--Hb_000414_080 Hb_005357_110 Hb_005357_110 Hb_003740_020--Hb_005357_110 Hb_029253_010 Hb_029253_010 Hb_003740_020--Hb_029253_010 Hb_005511_130 Hb_005511_130 Hb_003740_020--Hb_005511_130 Hb_004730_020 Hb_004730_020 Hb_003740_020--Hb_004730_020 Hb_000032_410 Hb_000032_410 Hb_003740_020--Hb_000032_410 Hb_000069_360 Hb_000069_360 Hb_000566_010--Hb_000069_360 Hb_003994_080 Hb_003994_080 Hb_000566_010--Hb_003994_080 Hb_002759_120 Hb_002759_120 Hb_000566_010--Hb_002759_120 Hb_003752_090 Hb_003752_090 Hb_000566_010--Hb_003752_090 Hb_000566_010--Hb_005665_090 Hb_008725_270 Hb_008725_270 Hb_003680_220--Hb_008725_270 Hb_002687_200 Hb_002687_200 Hb_003680_220--Hb_002687_200 Hb_000926_060 Hb_000926_060 Hb_003680_220--Hb_000926_060 Hb_000500_220 Hb_000500_220 Hb_003680_220--Hb_000500_220 Hb_009296_020 Hb_009296_020 Hb_003680_220--Hb_009296_020 Hb_003680_220--Hb_000007_090 Hb_000585_110 Hb_000585_110 Hb_000007_090--Hb_000585_110 Hb_000007_090--Hb_002687_200 Hb_002249_080 Hb_002249_080 Hb_000007_090--Hb_002249_080 Hb_000007_090--Hb_008725_270 Hb_019654_020 Hb_019654_020 Hb_000007_090--Hb_019654_020 Hb_012779_080 Hb_012779_080 Hb_005665_090--Hb_012779_080 Hb_009288_040 Hb_009288_040 Hb_005665_090--Hb_009288_040 Hb_001623_490 Hb_001623_490 Hb_005665_090--Hb_001623_490 Hb_000320_190 Hb_000320_190 Hb_005665_090--Hb_000320_190 Hb_000645_180 Hb_000645_180 Hb_005665_090--Hb_000645_180 Hb_010620_050 Hb_010620_050 Hb_005665_090--Hb_010620_050 Hb_000487_370 Hb_000487_370 Hb_000414_080--Hb_000487_370 Hb_000510_190 Hb_000510_190 Hb_000414_080--Hb_000510_190 Hb_000414_080--Hb_002249_080 Hb_000422_080 Hb_000422_080 Hb_000414_080--Hb_000422_080 Hb_003175_070 Hb_003175_070 Hb_000414_080--Hb_003175_070 Hb_002374_450 Hb_002374_450 Hb_000414_080--Hb_002374_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.6994 1.71668 5.50703 5.2572 0.619439 0.588257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03874 0.995962 0.775025 2.19658 4.66513

CAGE analysis