Hb_000834_180

Information

Type -
Description -
Location Contig834: 131428-136797
Sequence    

Annotation

kegg
ID rcu:RCOM_1053050
description kif4, putative
nr
ID XP_012076678.1
description PREDICTED: kinesin-13A-like isoform X1 [Jatropha curcas]
swissprot
ID Q940B8
description Kinesin-13A OS=Arabidopsis thaliana GN=KINESIN-13A PE=1 SV=1
trembl
ID A0A067KN14
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_07236 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-13a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59881: 131169-133304 , PASA_asmbl_59882: 133344-136486 , PASA_asmbl_59883: 136821-136943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_180 0.0 - - PREDICTED: kinesin-13A-like isoform X1 [Jatropha curcas]
2 Hb_001247_150 0.1098551765 - - hypothetical protein JCGZ_23179 [Jatropha curcas]
3 Hb_000834_220 0.1174147748 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
4 Hb_031385_010 0.1255197018 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
5 Hb_001946_200 0.1263999861 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
6 Hb_009113_080 0.1325731143 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
7 Hb_002217_360 0.1333016335 - - PREDICTED: nuclear poly(A) polymerase 3 isoform X1 [Jatropha curcas]
8 Hb_003606_050 0.1358115661 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
9 Hb_022092_110 0.136121598 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
10 Hb_005144_060 0.1377104247 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
11 Hb_012395_050 0.1381656885 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
12 Hb_000735_060 0.1382248011 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
13 Hb_003687_040 0.1388195279 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
14 Hb_004218_200 0.1394193732 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_003029_120 0.1394253746 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
16 Hb_001040_080 0.1413614476 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
17 Hb_000932_060 0.141681236 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001936_180 0.1421567975 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
19 Hb_001348_010 0.1424741315 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
20 Hb_005333_080 0.1426653135 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000834_180 Hb_000834_180 Hb_001247_150 Hb_001247_150 Hb_000834_180--Hb_001247_150 Hb_000834_220 Hb_000834_220 Hb_000834_180--Hb_000834_220 Hb_031385_010 Hb_031385_010 Hb_000834_180--Hb_031385_010 Hb_001946_200 Hb_001946_200 Hb_000834_180--Hb_001946_200 Hb_009113_080 Hb_009113_080 Hb_000834_180--Hb_009113_080 Hb_002217_360 Hb_002217_360 Hb_000834_180--Hb_002217_360 Hb_000932_060 Hb_000932_060 Hb_001247_150--Hb_000932_060 Hb_021065_010 Hb_021065_010 Hb_001247_150--Hb_021065_010 Hb_000418_170 Hb_000418_170 Hb_001247_150--Hb_000418_170 Hb_001247_150--Hb_009113_080 Hb_022092_110 Hb_022092_110 Hb_001247_150--Hb_022092_110 Hb_001440_010 Hb_001440_010 Hb_000834_220--Hb_001440_010 Hb_005144_060 Hb_005144_060 Hb_000834_220--Hb_005144_060 Hb_002918_120 Hb_002918_120 Hb_000834_220--Hb_002918_120 Hb_003656_090 Hb_003656_090 Hb_000834_220--Hb_003656_090 Hb_001936_180 Hb_001936_180 Hb_000834_220--Hb_001936_180 Hb_001597_030 Hb_001597_030 Hb_000834_220--Hb_001597_030 Hb_000230_360 Hb_000230_360 Hb_031385_010--Hb_000230_360 Hb_001048_100 Hb_001048_100 Hb_031385_010--Hb_001048_100 Hb_000061_310 Hb_000061_310 Hb_031385_010--Hb_000061_310 Hb_002316_020 Hb_002316_020 Hb_031385_010--Hb_002316_020 Hb_010174_180 Hb_010174_180 Hb_031385_010--Hb_010174_180 Hb_003687_040 Hb_003687_040 Hb_031385_010--Hb_003687_040 Hb_001946_200--Hb_001440_010 Hb_001946_200--Hb_022092_110 Hb_001946_200--Hb_001936_180 Hb_001946_200--Hb_009113_080 Hb_026240_020 Hb_026240_020 Hb_001946_200--Hb_026240_020 Hb_032920_030 Hb_032920_030 Hb_001946_200--Hb_032920_030 Hb_001085_190 Hb_001085_190 Hb_009113_080--Hb_001085_190 Hb_000977_030 Hb_000977_030 Hb_009113_080--Hb_000977_030 Hb_000005_360 Hb_000005_360 Hb_009113_080--Hb_000005_360 Hb_003125_210 Hb_003125_210 Hb_009113_080--Hb_003125_210 Hb_001318_100 Hb_001318_100 Hb_009113_080--Hb_001318_100 Hb_000333_030 Hb_000333_030 Hb_002217_360--Hb_000333_030 Hb_000574_170 Hb_000574_170 Hb_002217_360--Hb_000574_170 Hb_010222_040 Hb_010222_040 Hb_002217_360--Hb_010222_040 Hb_002217_360--Hb_001946_200 Hb_093077_010 Hb_093077_010 Hb_002217_360--Hb_093077_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.318522 2.08994 7.50402 9.37983 0.147327 0.506749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0212373 0 0.634675 3.45529 4.35059

CAGE analysis