Hb_002217_360

Information

Type -
Description -
Location Contig2217: 310909-316239
Sequence    

Annotation

kegg
ID rcu:RCOM_1001380
description poly(A) polymerase, putative (EC:2.7.7.19)
nr
ID XP_012084116.1
description PREDICTED: nuclear poly(A) polymerase 3 isoform X1 [Jatropha curcas]
swissprot
ID Q56XM9
description Nuclear poly(A) polymerase 3 OS=Arabidopsis thaliana GN=PAPS3 PE=1 SV=1
trembl
ID B9RZU0
description Poly(A) polymerase, putative OS=Ricinus communis GN=RCOM_1001380 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nuclear poly polymerase 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22940: 310938-315488 , PASA_asmbl_22941: 315788-316255
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_360 0.0 - - PREDICTED: nuclear poly(A) polymerase 3 isoform X1 [Jatropha curcas]
2 Hb_000333_030 0.107347798 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_000574_170 0.1218409801 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Jatropha curcas]
4 Hb_010222_040 0.1278897939 - - PREDICTED: kinesin-2 [Jatropha curcas]
5 Hb_000834_180 0.1333016335 - - PREDICTED: kinesin-13A-like isoform X1 [Jatropha curcas]
6 Hb_001946_200 0.1348711733 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
7 Hb_093077_010 0.1372165872 transcription factor TF Family: G2-like PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
8 Hb_009113_080 0.1387031344 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
9 Hb_001247_150 0.1390801147 - - hypothetical protein JCGZ_23179 [Jatropha curcas]
10 Hb_000083_080 0.141262268 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
11 Hb_003580_050 0.1418983806 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
12 Hb_000856_200 0.1446139726 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
13 Hb_144449_010 0.1453547678 - - Potassium transporter, putative [Ricinus communis]
14 Hb_000932_060 0.1492589507 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000417_050 0.1495121746 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
16 Hb_003029_120 0.1498824611 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
17 Hb_000977_030 0.1519466269 - - unnamed protein product [Vitis vinifera]
18 Hb_002724_010 0.1530462637 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
19 Hb_003145_010 0.1549725518 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
20 Hb_000318_010 0.1562771774 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002217_360 Hb_002217_360 Hb_000333_030 Hb_000333_030 Hb_002217_360--Hb_000333_030 Hb_000574_170 Hb_000574_170 Hb_002217_360--Hb_000574_170 Hb_010222_040 Hb_010222_040 Hb_002217_360--Hb_010222_040 Hb_000834_180 Hb_000834_180 Hb_002217_360--Hb_000834_180 Hb_001946_200 Hb_001946_200 Hb_002217_360--Hb_001946_200 Hb_093077_010 Hb_093077_010 Hb_002217_360--Hb_093077_010 Hb_000333_030--Hb_000574_170 Hb_000333_030--Hb_010222_040 Hb_001677_040 Hb_001677_040 Hb_000333_030--Hb_001677_040 Hb_000083_080 Hb_000083_080 Hb_000333_030--Hb_000083_080 Hb_002662_110 Hb_002662_110 Hb_000333_030--Hb_002662_110 Hb_000482_120 Hb_000482_120 Hb_000574_170--Hb_000482_120 Hb_000959_130 Hb_000959_130 Hb_000574_170--Hb_000959_130 Hb_000574_170--Hb_010222_040 Hb_010337_040 Hb_010337_040 Hb_000574_170--Hb_010337_040 Hb_000856_200 Hb_000856_200 Hb_010222_040--Hb_000856_200 Hb_010557_020 Hb_010557_020 Hb_010222_040--Hb_010557_020 Hb_000290_030 Hb_000290_030 Hb_010222_040--Hb_000290_030 Hb_144449_010 Hb_144449_010 Hb_010222_040--Hb_144449_010 Hb_001318_100 Hb_001318_100 Hb_010222_040--Hb_001318_100 Hb_001247_150 Hb_001247_150 Hb_000834_180--Hb_001247_150 Hb_000834_220 Hb_000834_220 Hb_000834_180--Hb_000834_220 Hb_031385_010 Hb_031385_010 Hb_000834_180--Hb_031385_010 Hb_000834_180--Hb_001946_200 Hb_009113_080 Hb_009113_080 Hb_000834_180--Hb_009113_080 Hb_001440_010 Hb_001440_010 Hb_001946_200--Hb_001440_010 Hb_022092_110 Hb_022092_110 Hb_001946_200--Hb_022092_110 Hb_001936_180 Hb_001936_180 Hb_001946_200--Hb_001936_180 Hb_001946_200--Hb_009113_080 Hb_026240_020 Hb_026240_020 Hb_001946_200--Hb_026240_020 Hb_032920_030 Hb_032920_030 Hb_001946_200--Hb_032920_030 Hb_000922_160 Hb_000922_160 Hb_093077_010--Hb_000922_160 Hb_003416_020 Hb_003416_020 Hb_093077_010--Hb_003416_020 Hb_006478_050 Hb_006478_050 Hb_093077_010--Hb_006478_050 Hb_000891_010 Hb_000891_010 Hb_093077_010--Hb_000891_010 Hb_000917_200 Hb_000917_200 Hb_093077_010--Hb_000917_200 Hb_001775_120 Hb_001775_120 Hb_093077_010--Hb_001775_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0634571 1.69688 4.79688 6.47725 0.091972 0.77672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0156643 0.268108 2.15407 5.51257

CAGE analysis