Hb_106070_010

Information

Type -
Description -
Location Contig106070: 11-529
Sequence    

Annotation

kegg
ID pmum:103322015
description uncharacterized LOC103322015
nr
ID XP_012477576.1
description PREDICTED: uncharacterized protein LOC105793196 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061FAE0
description CCHC-type integrase, putative OS=Theobroma cacao GN=TCM_033009 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106070_010 0.0 - - PREDICTED: uncharacterized protein LOC105793196 [Gossypium raimondii]
2 Hb_003291_030 0.1770730229 - - Gag-pol protein, putative [Solanum demissum]
3 Hb_003786_010 0.1794244358 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
4 Hb_008484_020 0.197059104 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
5 Hb_000084_140 0.2009983918 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
6 Hb_006940_020 0.206055148 - - polyprotein [Oryza australiensis]
7 Hb_004208_010 0.2075227517 - - PREDICTED: uncharacterized protein LOC105914588 [Setaria italica]
8 Hb_000366_030 0.2076087847 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Jatropha curcas]
9 Hb_003687_160 0.2092258284 - - Ran GTPase binding protein, putative [Ricinus communis]
10 Hb_001946_130 0.2112885525 - - -
11 Hb_182651_020 0.2116874963 - - alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_011994_070 0.2119744901 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
13 Hb_011218_030 0.2122016986 - - hypothetical protein VITISV_002891 [Vitis vinifera]
14 Hb_007594_110 0.2129276855 - - fructokinase [Manihot esculenta]
15 Hb_004109_130 0.2152516346 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
16 Hb_005779_090 0.2182299753 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
17 Hb_000538_300 0.218518611 - - PREDICTED: WAT1-related protein At3g02690, chloroplastic [Jatropha curcas]
18 Hb_000574_040 0.2195998166 - - PREDICTED: triphosphate tunel metalloenzyme 3-like isoform X1 [Jatropha curcas]
19 Hb_000527_120 0.2226317777 - - hypothetical protein VITISV_027174 [Vitis vinifera]
20 Hb_004712_200 0.2228879688 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]

Gene co-expression network

sample Hb_106070_010 Hb_106070_010 Hb_003291_030 Hb_003291_030 Hb_106070_010--Hb_003291_030 Hb_003786_010 Hb_003786_010 Hb_106070_010--Hb_003786_010 Hb_008484_020 Hb_008484_020 Hb_106070_010--Hb_008484_020 Hb_000084_140 Hb_000084_140 Hb_106070_010--Hb_000084_140 Hb_006940_020 Hb_006940_020 Hb_106070_010--Hb_006940_020 Hb_004208_010 Hb_004208_010 Hb_106070_010--Hb_004208_010 Hb_011649_030 Hb_011649_030 Hb_003291_030--Hb_011649_030 Hb_003291_030--Hb_008484_020 Hb_001946_130 Hb_001946_130 Hb_003291_030--Hb_001946_130 Hb_000574_330 Hb_000574_330 Hb_003291_030--Hb_000574_330 Hb_000352_060 Hb_000352_060 Hb_003291_030--Hb_000352_060 Hb_003687_160 Hb_003687_160 Hb_003291_030--Hb_003687_160 Hb_011472_050 Hb_011472_050 Hb_003786_010--Hb_011472_050 Hb_005542_010 Hb_005542_010 Hb_003786_010--Hb_005542_010 Hb_010565_030 Hb_010565_030 Hb_003786_010--Hb_010565_030 Hb_006277_080 Hb_006277_080 Hb_003786_010--Hb_006277_080 Hb_025045_010 Hb_025045_010 Hb_003786_010--Hb_025045_010 Hb_000574_320 Hb_000574_320 Hb_003786_010--Hb_000574_320 Hb_172486_010 Hb_172486_010 Hb_008484_020--Hb_172486_010 Hb_003540_070 Hb_003540_070 Hb_008484_020--Hb_003540_070 Hb_008484_020--Hb_001946_130 Hb_008484_020--Hb_011649_030 Hb_007793_030 Hb_007793_030 Hb_008484_020--Hb_007793_030 Hb_020400_020 Hb_020400_020 Hb_000084_140--Hb_020400_020 Hb_007933_030 Hb_007933_030 Hb_000084_140--Hb_007933_030 Hb_004109_130 Hb_004109_130 Hb_000084_140--Hb_004109_130 Hb_065525_070 Hb_065525_070 Hb_000084_140--Hb_065525_070 Hb_000538_300 Hb_000538_300 Hb_000084_140--Hb_000538_300 Hb_000976_130 Hb_000976_130 Hb_000084_140--Hb_000976_130 Hb_001221_360 Hb_001221_360 Hb_006940_020--Hb_001221_360 Hb_006940_020--Hb_010565_030 Hb_006940_020--Hb_003687_160 Hb_003020_300 Hb_003020_300 Hb_006940_020--Hb_003020_300 Hb_000173_110 Hb_000173_110 Hb_006940_020--Hb_000173_110 Hb_004242_120 Hb_004242_120 Hb_006940_020--Hb_004242_120 Hb_032260_110 Hb_032260_110 Hb_004208_010--Hb_032260_110 Hb_001942_020 Hb_001942_020 Hb_004208_010--Hb_001942_020 Hb_001421_040 Hb_001421_040 Hb_004208_010--Hb_001421_040 Hb_004208_010--Hb_003786_010 Hb_114271_010 Hb_114271_010 Hb_004208_010--Hb_114271_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.117649 0.303146 0.232808 0.224112 0 0.11227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.137834 0 0 0.180333 1.21014

CAGE analysis