Hb_000106_030

Information

Type -
Description -
Location Contig106: 76209-77693
Sequence    

Annotation

kegg
ID rcu:RCOM_0011470
description amino acid transporter, putative
nr
ID XP_002530469.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q28HE5
description Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1
trembl
ID B9SWV0
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0011470 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sodium-coupled neutral amino acid transporter 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01964: 75998-78173
cDNA
(Sanger)
(ID:Location)		 029_F05.ab1: 76003-76451 , 035_G22.ab1: 76001-76781 , 037_K18.ab1: 76001-76792

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000106_030 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_000836_060 0.11976645 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
3 Hb_000181_460 0.1254847365 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
4 Hb_132840_070 0.1316966275 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
5 Hb_000110_060 0.1363356388 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
6 Hb_000849_120 0.1392444646 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
7 Hb_003778_020 0.142788293 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_000381_010 0.1432041345 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Jatropha curcas]
9 Hb_005348_110 0.1490581649 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
10 Hb_001142_010 0.1538078541 - - PREDICTED: alcohol dehydrogenase-like 6 [Jatropha curcas]
11 Hb_010288_060 0.154823261 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
12 Hb_000077_360 0.1618137315 - - sugar transporter, putative [Ricinus communis]
13 Hb_009252_010 0.1629987542 - - PREDICTED: kinesin light chain [Jatropha curcas]
14 Hb_004326_010 0.1644362465 - - cationic amino acid transporter, putative [Ricinus communis]
15 Hb_015675_030 0.1655153803 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
16 Hb_002876_270 0.1660583932 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
17 Hb_021943_090 0.1660715956 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
18 Hb_000946_110 0.1674629815 - - GTP cyclohydrolase I, putative [Ricinus communis]
19 Hb_001546_010 0.1680618735 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010175_030 0.1704730919 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]

Gene co-expression network

sample Hb_000106_030 Hb_000106_030 Hb_000836_060 Hb_000836_060 Hb_000106_030--Hb_000836_060 Hb_000181_460 Hb_000181_460 Hb_000106_030--Hb_000181_460 Hb_132840_070 Hb_132840_070 Hb_000106_030--Hb_132840_070 Hb_000110_060 Hb_000110_060 Hb_000106_030--Hb_000110_060 Hb_000849_120 Hb_000849_120 Hb_000106_030--Hb_000849_120 Hb_003778_020 Hb_003778_020 Hb_000106_030--Hb_003778_020 Hb_030959_010 Hb_030959_010 Hb_000836_060--Hb_030959_010 Hb_002611_010 Hb_002611_010 Hb_000836_060--Hb_002611_010 Hb_009674_050 Hb_009674_050 Hb_000836_060--Hb_009674_050 Hb_001473_170 Hb_001473_170 Hb_000836_060--Hb_001473_170 Hb_005348_110 Hb_005348_110 Hb_000836_060--Hb_005348_110 Hb_004326_010 Hb_004326_010 Hb_000181_460--Hb_004326_010 Hb_005016_010 Hb_005016_010 Hb_000181_460--Hb_005016_010 Hb_010390_010 Hb_010390_010 Hb_000181_460--Hb_010390_010 Hb_000181_460--Hb_000110_060 Hb_177215_030 Hb_177215_030 Hb_000181_460--Hb_177215_030 Hb_003044_080 Hb_003044_080 Hb_000181_460--Hb_003044_080 Hb_069696_010 Hb_069696_010 Hb_132840_070--Hb_069696_010 Hb_000077_360 Hb_000077_360 Hb_132840_070--Hb_000077_360 Hb_001142_010 Hb_001142_010 Hb_132840_070--Hb_001142_010 Hb_000336_230 Hb_000336_230 Hb_132840_070--Hb_000336_230 Hb_015675_030 Hb_015675_030 Hb_132840_070--Hb_015675_030 Hb_002615_030 Hb_002615_030 Hb_000110_060--Hb_002615_030 Hb_003371_070 Hb_003371_070 Hb_000110_060--Hb_003371_070 Hb_000110_060--Hb_000849_120 Hb_001619_060 Hb_001619_060 Hb_000110_060--Hb_001619_060 Hb_021943_090 Hb_021943_090 Hb_000110_060--Hb_021943_090 Hb_000684_390 Hb_000684_390 Hb_000849_120--Hb_000684_390 Hb_000849_120--Hb_004326_010 Hb_000849_120--Hb_000181_460 Hb_009252_010 Hb_009252_010 Hb_000849_120--Hb_009252_010 Hb_000849_120--Hb_005348_110 Hb_000008_060 Hb_000008_060 Hb_003778_020--Hb_000008_060 Hb_001916_150 Hb_001916_150 Hb_003778_020--Hb_001916_150 Hb_003783_050 Hb_003783_050 Hb_003778_020--Hb_003783_050 Hb_000130_200 Hb_000130_200 Hb_003778_020--Hb_000130_200 Hb_031330_020 Hb_031330_020 Hb_003778_020--Hb_031330_020 Hb_000622_060 Hb_000622_060 Hb_003778_020--Hb_000622_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.94073 1.14946 2.60225 10.2683 0.296592 1.07493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.61123 2.0878 4.48117 5.16956 11.2267

CAGE analysis