Hb_069696_010

Information

Type -
Description -
Location Contig69696: 33-3285
Sequence    

Annotation

kegg
ID pop:POPTR_0003s21190g
description POPTRDRAFT_647468; hypothetical protein
nr
ID XP_002304860.2
description hypothetical protein POPTR_0003s21190g [Populus trichocarpa]
swissprot
ID Q8W496
description Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1
trembl
ID B9GY79
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21190g PE=4 SV=2
Gene Ontology
ID GO:0016491
description protochlorophyllide-dependent translocon component chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069696_010 0.0 - - hypothetical protein POPTR_0003s21190g [Populus trichocarpa]
2 Hb_132840_070 0.1464664887 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
3 Hb_000310_100 0.1555657574 - - conserved hypothetical protein [Ricinus communis]
4 Hb_025466_010 0.1696618706 - - unnamed protein product [Vitis vinifera]
5 Hb_001863_020 0.1729452287 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
6 Hb_001142_010 0.1771535754 - - PREDICTED: alcohol dehydrogenase-like 6 [Jatropha curcas]
7 Hb_010422_070 0.1783464949 - - PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas]
8 Hb_001153_120 0.1822513442 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
9 Hb_012244_010 0.1833004328 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
10 Hb_000525_050 0.1856417267 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005470_030 0.1857666552 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
12 Hb_005167_020 0.1862753957 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
13 Hb_000336_230 0.1909225863 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa007609mg [Prunus persica]
14 Hb_000106_030 0.1910866616 - - amino acid transporter, putative [Ricinus communis]
15 Hb_020437_020 0.1927990889 - - hypothetical protein POPTR_0001s01410g, partial [Populus trichocarpa]
16 Hb_002876_270 0.1989094813 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
17 Hb_000110_060 0.2038089231 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
18 Hb_027073_010 0.2045585951 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
19 Hb_025466_020 0.2069472347 - - tubulin beta-6 [Brassica oleracea var. italica]
20 Hb_042202_060 0.2102876589 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]

Gene co-expression network

sample Hb_069696_010 Hb_069696_010 Hb_132840_070 Hb_132840_070 Hb_069696_010--Hb_132840_070 Hb_000310_100 Hb_000310_100 Hb_069696_010--Hb_000310_100 Hb_025466_010 Hb_025466_010 Hb_069696_010--Hb_025466_010 Hb_001863_020 Hb_001863_020 Hb_069696_010--Hb_001863_020 Hb_001142_010 Hb_001142_010 Hb_069696_010--Hb_001142_010 Hb_010422_070 Hb_010422_070 Hb_069696_010--Hb_010422_070 Hb_000106_030 Hb_000106_030 Hb_132840_070--Hb_000106_030 Hb_000077_360 Hb_000077_360 Hb_132840_070--Hb_000077_360 Hb_132840_070--Hb_001142_010 Hb_000336_230 Hb_000336_230 Hb_132840_070--Hb_000336_230 Hb_015675_030 Hb_015675_030 Hb_132840_070--Hb_015675_030 Hb_011861_100 Hb_011861_100 Hb_000310_100--Hb_011861_100 Hb_000310_100--Hb_025466_010 Hb_001153_120 Hb_001153_120 Hb_000310_100--Hb_001153_120 Hb_012244_010 Hb_012244_010 Hb_000310_100--Hb_012244_010 Hb_106552_040 Hb_106552_040 Hb_000310_100--Hb_106552_040 Hb_027073_010 Hb_027073_010 Hb_000310_100--Hb_027073_010 Hb_025466_020 Hb_025466_020 Hb_025466_010--Hb_025466_020 Hb_000243_350 Hb_000243_350 Hb_025466_010--Hb_000243_350 Hb_025466_010--Hb_001153_120 Hb_006903_030 Hb_006903_030 Hb_025466_010--Hb_006903_030 Hb_025466_010--Hb_012244_010 Hb_001138_060 Hb_001138_060 Hb_001863_020--Hb_001138_060 Hb_001946_380 Hb_001946_380 Hb_001863_020--Hb_001946_380 Hb_001399_010 Hb_001399_010 Hb_001863_020--Hb_001399_010 Hb_000525_050 Hb_000525_050 Hb_001863_020--Hb_000525_050 Hb_042202_060 Hb_042202_060 Hb_001863_020--Hb_042202_060 Hb_005167_020 Hb_005167_020 Hb_001863_020--Hb_005167_020 Hb_000381_010 Hb_000381_010 Hb_001142_010--Hb_000381_010 Hb_001142_010--Hb_015675_030 Hb_001953_080 Hb_001953_080 Hb_001142_010--Hb_001953_080 Hb_001142_010--Hb_000106_030 Hb_010288_060 Hb_010288_060 Hb_001142_010--Hb_010288_060 Hb_000946_110 Hb_000946_110 Hb_001142_010--Hb_000946_110 Hb_010422_070--Hb_005167_020 Hb_004317_030 Hb_004317_030 Hb_010422_070--Hb_004317_030 Hb_000032_370 Hb_000032_370 Hb_010422_070--Hb_000032_370 Hb_000510_030 Hb_000510_030 Hb_010422_070--Hb_000510_030 Hb_004128_070 Hb_004128_070 Hb_010422_070--Hb_004128_070 Hb_002045_060 Hb_002045_060 Hb_010422_070--Hb_002045_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46624 0.53913 4.73441 11.1406 0.131569 0.457765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.72099 3.25587 10.0885 7.77547 13.7379

CAGE analysis