Hb_000336_230

Information

Type transcription factor
Description TF Family: mTERF
Location Contig336: 280076-281215
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa007609mg
description hypothetical protein
nr
ID XP_007222093.1
description hypothetical protein PRUPE_ppa007609mg [Prunus persica]
swissprot
ID -
description -
trembl
ID M5XB11
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007609mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_230 0.0 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa007609mg [Prunus persica]
2 Hb_007590_090 0.1732714205 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
3 Hb_140459_010 0.177389081 - - thioredoxin f-type, putative [Ricinus communis]
4 Hb_132840_070 0.1789829313 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
5 Hb_004007_110 0.1811792384 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
6 Hb_024468_010 0.1842245722 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
7 Hb_069696_010 0.1909225863 - - hypothetical protein POPTR_0003s21190g [Populus trichocarpa]
8 Hb_000110_060 0.1941620479 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
9 Hb_005016_010 0.1945526284 - - AMP dependent CoA ligase, putative [Ricinus communis]
10 Hb_000139_340 0.1949152626 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001998_200 0.19793649 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
12 Hb_000012_110 0.1982769143 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
13 Hb_001975_030 0.1987418039 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
14 Hb_010672_030 0.1997570244 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
15 Hb_000700_080 0.2000211986 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001975_040 0.2001235287 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
17 Hb_180378_010 0.2003091484 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
18 Hb_002615_030 0.2016177041 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
19 Hb_015778_030 0.2035325039 - - PREDICTED: probable myosin light chain kinase DDB_G0279831 [Jatropha curcas]
20 Hb_029385_010 0.2048920184 - - CTP synthase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000336_230 Hb_000336_230 Hb_007590_090 Hb_007590_090 Hb_000336_230--Hb_007590_090 Hb_140459_010 Hb_140459_010 Hb_000336_230--Hb_140459_010 Hb_132840_070 Hb_132840_070 Hb_000336_230--Hb_132840_070 Hb_004007_110 Hb_004007_110 Hb_000336_230--Hb_004007_110 Hb_024468_010 Hb_024468_010 Hb_000336_230--Hb_024468_010 Hb_069696_010 Hb_069696_010 Hb_000336_230--Hb_069696_010 Hb_001817_100 Hb_001817_100 Hb_007590_090--Hb_001817_100 Hb_002615_030 Hb_002615_030 Hb_007590_090--Hb_002615_030 Hb_007590_090--Hb_004007_110 Hb_001998_200 Hb_001998_200 Hb_007590_090--Hb_001998_200 Hb_000012_110 Hb_000012_110 Hb_007590_090--Hb_000012_110 Hb_002217_100 Hb_002217_100 Hb_007590_090--Hb_002217_100 Hb_183612_070 Hb_183612_070 Hb_140459_010--Hb_183612_070 Hb_020378_060 Hb_020378_060 Hb_140459_010--Hb_020378_060 Hb_001138_060 Hb_001138_060 Hb_140459_010--Hb_001138_060 Hb_002475_140 Hb_002475_140 Hb_140459_010--Hb_002475_140 Hb_003211_030 Hb_003211_030 Hb_140459_010--Hb_003211_030 Hb_001863_020 Hb_001863_020 Hb_140459_010--Hb_001863_020 Hb_000106_030 Hb_000106_030 Hb_132840_070--Hb_000106_030 Hb_132840_070--Hb_069696_010 Hb_000077_360 Hb_000077_360 Hb_132840_070--Hb_000077_360 Hb_001142_010 Hb_001142_010 Hb_132840_070--Hb_001142_010 Hb_015675_030 Hb_015675_030 Hb_132840_070--Hb_015675_030 Hb_004007_110--Hb_000012_110 Hb_002110_100 Hb_002110_100 Hb_004007_110--Hb_002110_100 Hb_004158_020 Hb_004158_020 Hb_004007_110--Hb_004158_020 Hb_028049_010 Hb_028049_010 Hb_004007_110--Hb_028049_010 Hb_012305_130 Hb_012305_130 Hb_004007_110--Hb_012305_130 Hb_000086_630 Hb_000086_630 Hb_024468_010--Hb_000086_630 Hb_007044_050 Hb_007044_050 Hb_024468_010--Hb_007044_050 Hb_001619_040 Hb_001619_040 Hb_024468_010--Hb_001619_040 Hb_001604_150 Hb_001604_150 Hb_024468_010--Hb_001604_150 Hb_001105_110 Hb_001105_110 Hb_024468_010--Hb_001105_110 Hb_000001_130 Hb_000001_130 Hb_024468_010--Hb_000001_130 Hb_000310_100 Hb_000310_100 Hb_069696_010--Hb_000310_100 Hb_025466_010 Hb_025466_010 Hb_069696_010--Hb_025466_010 Hb_069696_010--Hb_001863_020 Hb_069696_010--Hb_001142_010 Hb_010422_070 Hb_010422_070 Hb_069696_010--Hb_010422_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0470536 0.519882 0.306325 1.31851 0 0.036829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.670233 0.564812 0.973155 0.831939 1.23644

CAGE analysis