Hb_001142_010

Information

Type -
Description -
Location Contig1142: 6387-11556
Sequence    

Annotation

kegg
ID cmo:103482770
description alcohol dehydrogenase-like 6
nr
ID XP_012079677.1
description PREDICTED: alcohol dehydrogenase-like 6 [Jatropha curcas]
swissprot
ID Q8LEB2
description Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2
trembl
ID A0A0A0LTX9
description Uncharacterized protein OS=Cucumis sativus GN=Csa_1G044860 PE=3 SV=1
Gene Ontology
ID GO:0008270
description alcohol dehydrogenase-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04311: 7610-7853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001142_010 0.0 - - PREDICTED: alcohol dehydrogenase-like 6 [Jatropha curcas]
2 Hb_000381_010 0.1084626654 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Jatropha curcas]
3 Hb_015675_030 0.13423948 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
4 Hb_001953_080 0.1443672155 - - pseudouridine synthase family protein, partial [Manihot esculenta]
5 Hb_000106_030 0.1538078541 - - amino acid transporter, putative [Ricinus communis]
6 Hb_010288_060 0.1551996902 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
7 Hb_000946_110 0.1559502221 - - GTP cyclohydrolase I, putative [Ricinus communis]
8 Hb_012022_050 0.1609938503 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
9 Hb_003606_060 0.1620830622 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
10 Hb_132840_070 0.1646051625 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
11 Hb_006277_010 0.1654270448 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
12 Hb_004339_030 0.1677468493 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
13 Hb_000525_090 0.1755062793 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
14 Hb_011249_020 0.1756219751 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
15 Hb_158163_010 0.1760083988 - - protein binding protein, putative [Ricinus communis]
16 Hb_069696_010 0.1771535754 - - hypothetical protein POPTR_0003s21190g [Populus trichocarpa]
17 Hb_004046_030 0.1786605553 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
18 Hb_008699_030 0.1787683787 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
19 Hb_002876_270 0.1790297712 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
20 Hb_000240_030 0.179188398 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001142_010 Hb_001142_010 Hb_000381_010 Hb_000381_010 Hb_001142_010--Hb_000381_010 Hb_015675_030 Hb_015675_030 Hb_001142_010--Hb_015675_030 Hb_001953_080 Hb_001953_080 Hb_001142_010--Hb_001953_080 Hb_000106_030 Hb_000106_030 Hb_001142_010--Hb_000106_030 Hb_010288_060 Hb_010288_060 Hb_001142_010--Hb_010288_060 Hb_000946_110 Hb_000946_110 Hb_001142_010--Hb_000946_110 Hb_000656_330 Hb_000656_330 Hb_000381_010--Hb_000656_330 Hb_000381_010--Hb_000946_110 Hb_000381_010--Hb_015675_030 Hb_000381_010--Hb_000106_030 Hb_000381_010--Hb_010288_060 Hb_008699_030 Hb_008699_030 Hb_015675_030--Hb_008699_030 Hb_000240_030 Hb_000240_030 Hb_015675_030--Hb_000240_030 Hb_001195_070 Hb_001195_070 Hb_015675_030--Hb_001195_070 Hb_003453_050 Hb_003453_050 Hb_015675_030--Hb_003453_050 Hb_011249_020 Hb_011249_020 Hb_001953_080--Hb_011249_020 Hb_003020_260 Hb_003020_260 Hb_001953_080--Hb_003020_260 Hb_001307_030 Hb_001307_030 Hb_001953_080--Hb_001307_030 Hb_000297_120 Hb_000297_120 Hb_001953_080--Hb_000297_120 Hb_025098_010 Hb_025098_010 Hb_001953_080--Hb_025098_010 Hb_000649_140 Hb_000649_140 Hb_001953_080--Hb_000649_140 Hb_000836_060 Hb_000836_060 Hb_000106_030--Hb_000836_060 Hb_000181_460 Hb_000181_460 Hb_000106_030--Hb_000181_460 Hb_132840_070 Hb_132840_070 Hb_000106_030--Hb_132840_070 Hb_000110_060 Hb_000110_060 Hb_000106_030--Hb_000110_060 Hb_000849_120 Hb_000849_120 Hb_000106_030--Hb_000849_120 Hb_003778_020 Hb_003778_020 Hb_000106_030--Hb_003778_020 Hb_004339_030 Hb_004339_030 Hb_010288_060--Hb_004339_030 Hb_008147_080 Hb_008147_080 Hb_010288_060--Hb_008147_080 Hb_000008_350 Hb_000008_350 Hb_010288_060--Hb_000008_350 Hb_000390_030 Hb_000390_030 Hb_010288_060--Hb_000390_030 Hb_000739_210 Hb_000739_210 Hb_010288_060--Hb_000739_210 Hb_003581_290 Hb_003581_290 Hb_010288_060--Hb_003581_290 Hb_000946_110--Hb_000297_120 Hb_004046_030 Hb_004046_030 Hb_000946_110--Hb_004046_030 Hb_002804_040 Hb_002804_040 Hb_000946_110--Hb_002804_040 Hb_002043_040 Hb_002043_040 Hb_000946_110--Hb_002043_040 Hb_000309_050 Hb_000309_050 Hb_000946_110--Hb_000309_050 Hb_006277_010 Hb_006277_010 Hb_000946_110--Hb_006277_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00244 0.499701 3.28547 16.7881 1.19631 4.34121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.12126 5.35678 9.22217 9.01941 18.8613

CAGE analysis