Hb_003453_050

Information

Type -
Description -
Location Contig3453: 33131-36106
Sequence    

Annotation

kegg
ID tcc:TCM_017372
description Mitochondrial substrate carrier family protein isoform 1
nr
ID XP_012067384.1
description PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
swissprot
ID Q6GQS1
description Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Mus musculus GN=Slc25a23 PE=2 SV=1
trembl
ID A0A067L099
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26894 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-binding mitochondrial carrier protein s -1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003453_050 0.0 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
2 Hb_000622_290 0.0969646445 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
3 Hb_001946_380 0.1049661361 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
4 Hb_011606_020 0.1094779534 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
5 Hb_000365_370 0.1151431876 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007441_080 0.1193622263 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
7 Hb_001671_030 0.1215781242 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
8 Hb_012244_010 0.1250499308 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
9 Hb_007192_030 0.1263500833 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
10 Hb_011249_020 0.1304209815 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
11 Hb_000723_290 0.1320798051 - - calcium lipid binding protein, putative [Ricinus communis]
12 Hb_000107_430 0.1344180126 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
13 Hb_003875_030 0.1346909885 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
14 Hb_001663_040 0.1355790586 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
15 Hb_020378_060 0.1361769021 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
16 Hb_000599_210 0.1366009449 - - serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_000240_030 0.137906572 - - conserved hypothetical protein [Ricinus communis]
18 Hb_171718_010 0.1382666658 - - PREDICTED: disease resistance protein At4g27190-like [Eucalyptus grandis]
19 Hb_002762_110 0.1387782011 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011224_100 0.1393088516 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003453_050 Hb_003453_050 Hb_000622_290 Hb_000622_290 Hb_003453_050--Hb_000622_290 Hb_001946_380 Hb_001946_380 Hb_003453_050--Hb_001946_380 Hb_011606_020 Hb_011606_020 Hb_003453_050--Hb_011606_020 Hb_000365_370 Hb_000365_370 Hb_003453_050--Hb_000365_370 Hb_007441_080 Hb_007441_080 Hb_003453_050--Hb_007441_080 Hb_001671_030 Hb_001671_030 Hb_003453_050--Hb_001671_030 Hb_002762_110 Hb_002762_110 Hb_000622_290--Hb_002762_110 Hb_007192_030 Hb_007192_030 Hb_000622_290--Hb_007192_030 Hb_004644_030 Hb_004644_030 Hb_000622_290--Hb_004644_030 Hb_000622_290--Hb_001946_380 Hb_000107_430 Hb_000107_430 Hb_000622_290--Hb_000107_430 Hb_001369_790 Hb_001369_790 Hb_000622_290--Hb_001369_790 Hb_121089_040 Hb_121089_040 Hb_001946_380--Hb_121089_040 Hb_001946_380--Hb_002762_110 Hb_171718_010 Hb_171718_010 Hb_001946_380--Hb_171718_010 Hb_001946_380--Hb_000107_430 Hb_003875_030 Hb_003875_030 Hb_001946_380--Hb_003875_030 Hb_000116_130 Hb_000116_130 Hb_011606_020--Hb_000116_130 Hb_011606_020--Hb_000107_430 Hb_001226_140 Hb_001226_140 Hb_011606_020--Hb_001226_140 Hb_001080_300 Hb_001080_300 Hb_011606_020--Hb_001080_300 Hb_002110_100 Hb_002110_100 Hb_011606_020--Hb_002110_100 Hb_011139_040 Hb_011139_040 Hb_011606_020--Hb_011139_040 Hb_000723_290 Hb_000723_290 Hb_000365_370--Hb_000723_290 Hb_000167_050 Hb_000167_050 Hb_000365_370--Hb_000167_050 Hb_000107_510 Hb_000107_510 Hb_000365_370--Hb_000107_510 Hb_010577_040 Hb_010577_040 Hb_000365_370--Hb_010577_040 Hb_004128_070 Hb_004128_070 Hb_000365_370--Hb_004128_070 Hb_007441_080--Hb_002110_100 Hb_000742_020 Hb_000742_020 Hb_007441_080--Hb_000742_020 Hb_000684_030 Hb_000684_030 Hb_007441_080--Hb_000684_030 Hb_003602_060 Hb_003602_060 Hb_007441_080--Hb_003602_060 Hb_000590_120 Hb_000590_120 Hb_007441_080--Hb_000590_120 Hb_007441_080--Hb_003875_030 Hb_005016_040 Hb_005016_040 Hb_001671_030--Hb_005016_040 Hb_001671_030--Hb_007192_030 Hb_001754_080 Hb_001754_080 Hb_001671_030--Hb_001754_080 Hb_001671_030--Hb_011606_020 Hb_065525_120 Hb_065525_120 Hb_001671_030--Hb_065525_120 Hb_002677_020 Hb_002677_020 Hb_001671_030--Hb_002677_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09533 1.91934 4.50536 9.72392 0.750568 1.7196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.213 5.54105 6.2098 2.3693 10.9856

CAGE analysis