Hb_010288_060

Information

Type -
Description -
Location Contig10288: 58094-62579
Sequence    

Annotation

kegg
ID cit:102629298
description dnaJ homolog subfamily B member 11-like
nr
ID XP_012082868.1
description PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
swissprot
ID Q9LZK5
description DnaJ protein ERDJ3B OS=Arabidopsis thaliana GN=ERDJ3B PE=1 SV=1
trembl
ID A0A067JWC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14007 PE=4 SV=1
Gene Ontology
ID GO:0051082
description dnaj protein erdj3b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01148: 58292-62499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010288_060 0.0 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
2 Hb_004339_030 0.0893531606 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
3 Hb_008147_080 0.1004165864 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
4 Hb_000008_350 0.1187337804 - - -
5 Hb_000390_030 0.1220544412 - - hypothetical protein ZEAMMB73_364791 [Zea mays]
6 Hb_000739_210 0.1222260555 - - PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Jatropha curcas]
7 Hb_003581_290 0.1242478136 - - PREDICTED: UDP-galactose/UDP-glucose transporter 3 [Fragaria vesca subsp. vesca]
8 Hb_000914_100 0.1291424777 - - unknown [Glycine max]
9 Hb_008375_010 0.1304071844 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
10 Hb_000352_220 0.1326908751 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_000077_150 0.1342926953 - - PREDICTED: riboflavin synthase [Jatropha curcas]
12 Hb_000189_450 0.1343918135 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
13 Hb_003106_190 0.1343968821 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
14 Hb_055690_010 0.1371906513 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
15 Hb_004644_030 0.1376798466 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
16 Hb_023988_030 0.1384289008 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
17 Hb_002611_010 0.1389027397 - - amino acid transporter, putative [Ricinus communis]
18 Hb_003226_190 0.138982613 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
19 Hb_001677_220 0.140851764 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
20 Hb_000056_090 0.1413464627 - - UDP-galactose transporter 3 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_010288_060 Hb_010288_060 Hb_004339_030 Hb_004339_030 Hb_010288_060--Hb_004339_030 Hb_008147_080 Hb_008147_080 Hb_010288_060--Hb_008147_080 Hb_000008_350 Hb_000008_350 Hb_010288_060--Hb_000008_350 Hb_000390_030 Hb_000390_030 Hb_010288_060--Hb_000390_030 Hb_000739_210 Hb_000739_210 Hb_010288_060--Hb_000739_210 Hb_003581_290 Hb_003581_290 Hb_010288_060--Hb_003581_290 Hb_004339_030--Hb_003581_290 Hb_004339_030--Hb_008147_080 Hb_004339_030--Hb_000008_350 Hb_004339_030--Hb_000739_210 Hb_008375_010 Hb_008375_010 Hb_004339_030--Hb_008375_010 Hb_004644_030 Hb_004644_030 Hb_008147_080--Hb_004644_030 Hb_005218_080 Hb_005218_080 Hb_008147_080--Hb_005218_080 Hb_008147_080--Hb_008375_010 Hb_001578_020 Hb_001578_020 Hb_008147_080--Hb_001578_020 Hb_000388_060 Hb_000388_060 Hb_008147_080--Hb_000388_060 Hb_000077_150 Hb_000077_150 Hb_008147_080--Hb_000077_150 Hb_001677_220 Hb_001677_220 Hb_000008_350--Hb_001677_220 Hb_000008_350--Hb_008375_010 Hb_000008_350--Hb_008147_080 Hb_000816_200 Hb_000816_200 Hb_000008_350--Hb_000816_200 Hb_003124_120 Hb_003124_120 Hb_000008_350--Hb_003124_120 Hb_000529_140 Hb_000529_140 Hb_000390_030--Hb_000529_140 Hb_010175_030 Hb_010175_030 Hb_000390_030--Hb_010175_030 Hb_008511_140 Hb_008511_140 Hb_000390_030--Hb_008511_140 Hb_009252_010 Hb_009252_010 Hb_000390_030--Hb_009252_010 Hb_000495_080 Hb_000495_080 Hb_000390_030--Hb_000495_080 Hb_000256_110 Hb_000256_110 Hb_000739_210--Hb_000256_110 Hb_000896_050 Hb_000896_050 Hb_000739_210--Hb_000896_050 Hb_000739_210--Hb_000008_350 Hb_000062_510 Hb_000062_510 Hb_000739_210--Hb_000062_510 Hb_029920_030 Hb_029920_030 Hb_003581_290--Hb_029920_030 Hb_003581_290--Hb_000816_200 Hb_003581_290--Hb_008147_080 Hb_003581_290--Hb_000008_350 Hb_000058_080 Hb_000058_080 Hb_003581_290--Hb_000058_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.22241 9.30276 17.1795 44.516 9.15941 13.2368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.5853 18.4229 18.7569 34.3 84.6589

CAGE analysis