Hb_000381_010

Information

Type -
Description -
Location Contig381: 12499-17678
Sequence    

Annotation

kegg
ID rcu:RCOM_0856680
description prephenate dehydratase, putative (EC:4.2.1.51)
nr
ID XP_012089868.1
description PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9SA96
description Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1
trembl
ID A0A067JT93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01826 PE=4 SV=1
Gene Ontology
ID GO:0004664
description arogenate dehydratase prephenate dehydratase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38603: 12651-33263
cDNA
(Sanger)
(ID:Location)		 011_E01.ab1: 12651-14704 , 035_H06.ab1: 12651-14739

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000381_010 0.0 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Jatropha curcas]
2 Hb_001142_010 0.1084626654 - - PREDICTED: alcohol dehydrogenase-like 6 [Jatropha curcas]
3 Hb_000656_330 0.1298786048 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
4 Hb_000946_110 0.1329947556 - - GTP cyclohydrolase I, putative [Ricinus communis]
5 Hb_015675_030 0.1426576971 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
6 Hb_000106_030 0.1432041345 - - amino acid transporter, putative [Ricinus communis]
7 Hb_010288_060 0.1444648644 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
8 Hb_088327_010 0.1500351511 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
9 Hb_001953_080 0.1528019588 - - pseudouridine synthase family protein, partial [Manihot esculenta]
10 Hb_000390_030 0.1561699429 - - hypothetical protein ZEAMMB73_364791 [Zea mays]
11 Hb_003606_060 0.1565641438 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
12 Hb_001033_070 0.1571615532 - - seryl-tRNA synthetase, putative [Ricinus communis]
13 Hb_015978_110 0.1664392733 - - PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Jatropha curcas]
14 Hb_005348_110 0.1675324223 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
15 Hb_006277_010 0.1705320766 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
16 Hb_003453_050 0.1714077239 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
17 Hb_000019_180 0.1734329136 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
18 Hb_010175_030 0.1735712226 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
19 Hb_011224_100 0.1755979802 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009252_010 0.1763945642 - - PREDICTED: kinesin light chain [Jatropha curcas]

Gene co-expression network

sample Hb_000381_010 Hb_000381_010 Hb_001142_010 Hb_001142_010 Hb_000381_010--Hb_001142_010 Hb_000656_330 Hb_000656_330 Hb_000381_010--Hb_000656_330 Hb_000946_110 Hb_000946_110 Hb_000381_010--Hb_000946_110 Hb_015675_030 Hb_015675_030 Hb_000381_010--Hb_015675_030 Hb_000106_030 Hb_000106_030 Hb_000381_010--Hb_000106_030 Hb_010288_060 Hb_010288_060 Hb_000381_010--Hb_010288_060 Hb_001142_010--Hb_015675_030 Hb_001953_080 Hb_001953_080 Hb_001142_010--Hb_001953_080 Hb_001142_010--Hb_000106_030 Hb_001142_010--Hb_010288_060 Hb_001142_010--Hb_000946_110 Hb_009252_010 Hb_009252_010 Hb_000656_330--Hb_009252_010 Hb_021495_020 Hb_021495_020 Hb_000656_330--Hb_021495_020 Hb_015978_110 Hb_015978_110 Hb_000656_330--Hb_015978_110 Hb_009674_050 Hb_009674_050 Hb_000656_330--Hb_009674_050 Hb_005348_110 Hb_005348_110 Hb_000656_330--Hb_005348_110 Hb_000297_120 Hb_000297_120 Hb_000946_110--Hb_000297_120 Hb_004046_030 Hb_004046_030 Hb_000946_110--Hb_004046_030 Hb_002804_040 Hb_002804_040 Hb_000946_110--Hb_002804_040 Hb_002043_040 Hb_002043_040 Hb_000946_110--Hb_002043_040 Hb_000309_050 Hb_000309_050 Hb_000946_110--Hb_000309_050 Hb_006277_010 Hb_006277_010 Hb_000946_110--Hb_006277_010 Hb_008699_030 Hb_008699_030 Hb_015675_030--Hb_008699_030 Hb_000240_030 Hb_000240_030 Hb_015675_030--Hb_000240_030 Hb_001195_070 Hb_001195_070 Hb_015675_030--Hb_001195_070 Hb_003453_050 Hb_003453_050 Hb_015675_030--Hb_003453_050 Hb_000836_060 Hb_000836_060 Hb_000106_030--Hb_000836_060 Hb_000181_460 Hb_000181_460 Hb_000106_030--Hb_000181_460 Hb_132840_070 Hb_132840_070 Hb_000106_030--Hb_132840_070 Hb_000110_060 Hb_000110_060 Hb_000106_030--Hb_000110_060 Hb_000849_120 Hb_000849_120 Hb_000106_030--Hb_000849_120 Hb_003778_020 Hb_003778_020 Hb_000106_030--Hb_003778_020 Hb_004339_030 Hb_004339_030 Hb_010288_060--Hb_004339_030 Hb_008147_080 Hb_008147_080 Hb_010288_060--Hb_008147_080 Hb_000008_350 Hb_000008_350 Hb_010288_060--Hb_000008_350 Hb_000390_030 Hb_000390_030 Hb_010288_060--Hb_000390_030 Hb_000739_210 Hb_000739_210 Hb_010288_060--Hb_000739_210 Hb_003581_290 Hb_003581_290 Hb_010288_060--Hb_003581_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00655 1.27099 1.74394 11.7446 1.09732 3.58454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.12151 3.83735 7.23552 4.42317 15.5662

CAGE analysis