Hb_015978_110

Information

Type -
Description -
Location Contig15978: 54519-56453
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11650g
description POPTRDRAFT_245595; hypothetical protein
nr
ID XP_012082883.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9LZP3
description Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1
trembl
ID A0A067K8Y3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14229: 53192-53617 , PASA_asmbl_14231: 54546-54718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015978_110 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Jatropha curcas]
2 Hb_021495_020 0.1549249557 - - chitinase, putative [Ricinus communis]
3 Hb_000656_330 0.1597706158 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
4 Hb_000381_010 0.1664392733 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Jatropha curcas]
5 Hb_003030_030 0.1671830162 - - -
6 Hb_113818_010 0.1676724995 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
7 Hb_000417_170 0.1720224891 - - PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas]
8 Hb_003141_070 0.1725940833 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
9 Hb_000331_490 0.1726565625 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
10 Hb_000300_660 0.1740709098 - - unknown [Glycine max]
11 Hb_001916_090 0.1782693383 - - beta-1,2-n-acetylglucosaminyltransferase II, putative [Ricinus communis]
12 Hb_000230_290 0.1784863241 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_015934_120 0.1833235199 - - PREDICTED: callose synthase 7 [Vitis vinifera]
14 Hb_000946_110 0.1852185842 - - GTP cyclohydrolase I, putative [Ricinus communis]
15 Hb_003994_300 0.185415409 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000327_110 0.1871420481 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
17 Hb_003911_020 0.1888223503 - - PREDICTED: uncharacterized protein LOC105121332 [Populus euphratica]
18 Hb_000105_120 0.1907417835 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
19 Hb_011224_100 0.191370014 - - conserved hypothetical protein [Ricinus communis]
20 Hb_079483_020 0.1920463383 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_015978_110 Hb_015978_110 Hb_021495_020 Hb_021495_020 Hb_015978_110--Hb_021495_020 Hb_000656_330 Hb_000656_330 Hb_015978_110--Hb_000656_330 Hb_000381_010 Hb_000381_010 Hb_015978_110--Hb_000381_010 Hb_003030_030 Hb_003030_030 Hb_015978_110--Hb_003030_030 Hb_113818_010 Hb_113818_010 Hb_015978_110--Hb_113818_010 Hb_000417_170 Hb_000417_170 Hb_015978_110--Hb_000417_170 Hb_000062_400 Hb_000062_400 Hb_021495_020--Hb_000062_400 Hb_001491_030 Hb_001491_030 Hb_021495_020--Hb_001491_030 Hb_009020_040 Hb_009020_040 Hb_021495_020--Hb_009020_040 Hb_011926_040 Hb_011926_040 Hb_021495_020--Hb_011926_040 Hb_003746_010 Hb_003746_010 Hb_021495_020--Hb_003746_010 Hb_011224_100 Hb_011224_100 Hb_021495_020--Hb_011224_100 Hb_000656_330--Hb_000381_010 Hb_009252_010 Hb_009252_010 Hb_000656_330--Hb_009252_010 Hb_000656_330--Hb_021495_020 Hb_009674_050 Hb_009674_050 Hb_000656_330--Hb_009674_050 Hb_005348_110 Hb_005348_110 Hb_000656_330--Hb_005348_110 Hb_001142_010 Hb_001142_010 Hb_000381_010--Hb_001142_010 Hb_000946_110 Hb_000946_110 Hb_000381_010--Hb_000946_110 Hb_015675_030 Hb_015675_030 Hb_000381_010--Hb_015675_030 Hb_000106_030 Hb_000106_030 Hb_000381_010--Hb_000106_030 Hb_010288_060 Hb_010288_060 Hb_000381_010--Hb_010288_060 Hb_000656_090 Hb_000656_090 Hb_003030_030--Hb_000656_090 Hb_003141_070 Hb_003141_070 Hb_003030_030--Hb_003141_070 Hb_004445_020 Hb_004445_020 Hb_003030_030--Hb_004445_020 Hb_000105_120 Hb_000105_120 Hb_003030_030--Hb_000105_120 Hb_003606_060 Hb_003606_060 Hb_003030_030--Hb_003606_060 Hb_000189_480 Hb_000189_480 Hb_113818_010--Hb_000189_480 Hb_015934_120 Hb_015934_120 Hb_113818_010--Hb_015934_120 Hb_001504_030 Hb_001504_030 Hb_113818_010--Hb_001504_030 Hb_002289_060 Hb_002289_060 Hb_113818_010--Hb_002289_060 Hb_000244_180 Hb_000244_180 Hb_113818_010--Hb_000244_180 Hb_009661_030 Hb_009661_030 Hb_113818_010--Hb_009661_030 Hb_030959_010 Hb_030959_010 Hb_000417_170--Hb_030959_010 Hb_000417_170--Hb_009252_010 Hb_000417_170--Hb_003746_010 Hb_004097_090 Hb_004097_090 Hb_000417_170--Hb_004097_090 Hb_000445_150 Hb_000445_150 Hb_000417_170--Hb_000445_150 Hb_000417_170--Hb_005348_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.46203 4.52744 2.05024 26.3984 6.22976 10.7696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.85311 10.6107 12.2502 4.01749 33.7586

CAGE analysis