Hb_183612_070

Information

Type -
Description -
Location Contig183612: 30163-32701
Sequence    

Annotation

kegg
ID -
description -
nr
ID CBI31916.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17946: 29571-30694 , PASA_asmbl_17947: 30280-30430 , PASA_asmbl_17948: 30788-31027 , PASA_asmbl_17949: 31066-31701 , PASA_asmbl_17950: 31799-32042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183612_070 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_140459_010 0.133087717 - - thioredoxin f-type, putative [Ricinus communis]
3 Hb_003124_110 0.1399184283 - - hypothetical protein VITISV_026680 [Vitis vinifera]
4 Hb_001214_180 0.145638983 - - -
5 Hb_000615_050 0.1585497557 - - Potassium transporter 11 family protein [Populus trichocarpa]
6 Hb_100886_010 0.1603040272 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_000139_340 0.1663062627 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000465_070 0.1741584619 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
9 Hb_001138_060 0.1752636538 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
10 Hb_001723_060 0.1765083827 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
11 Hb_000457_290 0.1767027712 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
12 Hb_001629_090 0.1814408399 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000140_270 0.1822522448 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
14 Hb_012627_040 0.1823102015 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
15 Hb_001898_180 0.1830693747 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
16 Hb_140627_010 0.1843441554 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009615_120 0.1855457953 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
18 Hb_001214_050 0.1855548007 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
19 Hb_009778_060 0.1866874919 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
20 Hb_002900_110 0.1871547348 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_183612_070 Hb_183612_070 Hb_140459_010 Hb_140459_010 Hb_183612_070--Hb_140459_010 Hb_003124_110 Hb_003124_110 Hb_183612_070--Hb_003124_110 Hb_001214_180 Hb_001214_180 Hb_183612_070--Hb_001214_180 Hb_000615_050 Hb_000615_050 Hb_183612_070--Hb_000615_050 Hb_100886_010 Hb_100886_010 Hb_183612_070--Hb_100886_010 Hb_000139_340 Hb_000139_340 Hb_183612_070--Hb_000139_340 Hb_020378_060 Hb_020378_060 Hb_140459_010--Hb_020378_060 Hb_001138_060 Hb_001138_060 Hb_140459_010--Hb_001138_060 Hb_002475_140 Hb_002475_140 Hb_140459_010--Hb_002475_140 Hb_003211_030 Hb_003211_030 Hb_140459_010--Hb_003211_030 Hb_001863_020 Hb_001863_020 Hb_140459_010--Hb_001863_020 Hb_000500_050 Hb_000500_050 Hb_003124_110--Hb_000500_050 Hb_000032_400 Hb_000032_400 Hb_003124_110--Hb_000032_400 Hb_009150_030 Hb_009150_030 Hb_003124_110--Hb_009150_030 Hb_001229_020 Hb_001229_020 Hb_003124_110--Hb_001229_020 Hb_003124_110--Hb_140459_010 Hb_000120_040 Hb_000120_040 Hb_001214_180--Hb_000120_040 Hb_000417_200 Hb_000417_200 Hb_001214_180--Hb_000417_200 Hb_009778_060 Hb_009778_060 Hb_001214_180--Hb_009778_060 Hb_001405_070 Hb_001405_070 Hb_001214_180--Hb_001405_070 Hb_000482_040 Hb_000482_040 Hb_001214_180--Hb_000482_040 Hb_001214_180--Hb_001138_060 Hb_001662_130 Hb_001662_130 Hb_000615_050--Hb_001662_130 Hb_001766_050 Hb_001766_050 Hb_000615_050--Hb_001766_050 Hb_000649_140 Hb_000649_140 Hb_000615_050--Hb_000649_140 Hb_158530_020 Hb_158530_020 Hb_000615_050--Hb_158530_020 Hb_004951_060 Hb_004951_060 Hb_000615_050--Hb_004951_060 Hb_001541_120 Hb_001541_120 Hb_000615_050--Hb_001541_120 Hb_000465_070 Hb_000465_070 Hb_100886_010--Hb_000465_070 Hb_000035_480 Hb_000035_480 Hb_100886_010--Hb_000035_480 Hb_140627_010 Hb_140627_010 Hb_100886_010--Hb_140627_010 Hb_000072_200 Hb_000072_200 Hb_100886_010--Hb_000072_200 Hb_003020_260 Hb_003020_260 Hb_100886_010--Hb_003020_260 Hb_000457_290 Hb_000457_290 Hb_100886_010--Hb_000457_290 Hb_002900_110 Hb_002900_110 Hb_000139_340--Hb_002900_110 Hb_180378_010 Hb_180378_010 Hb_000139_340--Hb_180378_010 Hb_094970_010 Hb_094970_010 Hb_000139_340--Hb_094970_010 Hb_005015_110 Hb_005015_110 Hb_000139_340--Hb_005015_110 Hb_001571_060 Hb_001571_060 Hb_000139_340--Hb_001571_060 Hb_005218_080 Hb_005218_080 Hb_000139_340--Hb_005218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.135162 0.470051 0.242025 0.343735 0.0723727 0.0297313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.531556 0.650245 0.423742 0.337293 1.12943

CAGE analysis