Hb_009150_030

Information

Type -
Description -
Location Contig9150: 26316-28219
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14920g
description POPTRDRAFT_81350; hypothetical protein
nr
ID XP_002316008.1
description hypothetical protein POPTR_0010s14920g [Populus trichocarpa]
swissprot
ID H2DH17
description Cytochrome P450 CYP749A22 OS=Panax ginseng PE=2 SV=1
trembl
ID B9HWV6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14920g PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 cyp749a22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62244: 26207-26764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009150_030 0.0 - - hypothetical protein POPTR_0010s14920g [Populus trichocarpa]
2 Hb_003124_110 0.150241309 - - hypothetical protein VITISV_026680 [Vitis vinifera]
3 Hb_000120_040 0.161891607 - - -
4 Hb_001214_180 0.183967758 - - -
5 Hb_007576_150 0.1854109209 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
6 Hb_002290_030 0.1918839849 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
7 Hb_000318_130 0.1928478032 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_002205_240 0.1944265614 - - hypothetical protein PRUPE_ppa005987mg [Prunus persica]
9 Hb_002078_270 0.197066157 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
10 Hb_000140_270 0.1975246113 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
11 Hb_004375_050 0.1978439598 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001862_090 0.2000901643 - - hypothetical protein VITISV_026680 [Vitis vinifera]
13 Hb_001629_090 0.2006481535 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009778_060 0.2035820521 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
15 Hb_004241_020 0.2042130597 - - PREDICTED: DAG protein, chloroplastic-like [Jatropha curcas]
16 Hb_022378_010 0.2054927494 - - PREDICTED: uncharacterized protein LOC105634715 isoform X1 [Jatropha curcas]
17 Hb_000297_150 0.2063147243 - - PREDICTED: uncharacterized protein LOC103500908 [Cucumis melo]
18 Hb_002374_250 0.2072378642 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005917_030 0.2095439513 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005227_040 0.2102870709 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_009150_030 Hb_009150_030 Hb_003124_110 Hb_003124_110 Hb_009150_030--Hb_003124_110 Hb_000120_040 Hb_000120_040 Hb_009150_030--Hb_000120_040 Hb_001214_180 Hb_001214_180 Hb_009150_030--Hb_001214_180 Hb_007576_150 Hb_007576_150 Hb_009150_030--Hb_007576_150 Hb_002290_030 Hb_002290_030 Hb_009150_030--Hb_002290_030 Hb_000318_130 Hb_000318_130 Hb_009150_030--Hb_000318_130 Hb_000500_050 Hb_000500_050 Hb_003124_110--Hb_000500_050 Hb_183612_070 Hb_183612_070 Hb_003124_110--Hb_183612_070 Hb_000032_400 Hb_000032_400 Hb_003124_110--Hb_000032_400 Hb_001229_020 Hb_001229_020 Hb_003124_110--Hb_001229_020 Hb_140459_010 Hb_140459_010 Hb_003124_110--Hb_140459_010 Hb_006420_050 Hb_006420_050 Hb_000120_040--Hb_006420_050 Hb_000120_040--Hb_001214_180 Hb_000417_200 Hb_000417_200 Hb_000120_040--Hb_000417_200 Hb_005237_050 Hb_005237_050 Hb_000120_040--Hb_005237_050 Hb_000122_210 Hb_000122_210 Hb_000120_040--Hb_000122_210 Hb_009778_060 Hb_009778_060 Hb_000120_040--Hb_009778_060 Hb_001214_180--Hb_000417_200 Hb_001214_180--Hb_009778_060 Hb_001405_070 Hb_001405_070 Hb_001214_180--Hb_001405_070 Hb_000482_040 Hb_000482_040 Hb_001214_180--Hb_000482_040 Hb_001138_060 Hb_001138_060 Hb_001214_180--Hb_001138_060 Hb_000934_020 Hb_000934_020 Hb_007576_150--Hb_000934_020 Hb_000189_250 Hb_000189_250 Hb_007576_150--Hb_000189_250 Hb_000640_260 Hb_000640_260 Hb_007576_150--Hb_000640_260 Hb_003029_140 Hb_003029_140 Hb_007576_150--Hb_003029_140 Hb_001890_010 Hb_001890_010 Hb_007576_150--Hb_001890_010 Hb_003878_080 Hb_003878_080 Hb_007576_150--Hb_003878_080 Hb_004375_050 Hb_004375_050 Hb_002290_030--Hb_004375_050 Hb_001629_090 Hb_001629_090 Hb_002290_030--Hb_001629_090 Hb_005147_080 Hb_005147_080 Hb_002290_030--Hb_005147_080 Hb_000983_070 Hb_000983_070 Hb_002290_030--Hb_000983_070 Hb_002290_030--Hb_000318_130 Hb_003029_020 Hb_003029_020 Hb_002290_030--Hb_003029_020 Hb_000318_130--Hb_004375_050 Hb_003941_030 Hb_003941_030 Hb_000318_130--Hb_003941_030 Hb_000318_130--Hb_001138_060 Hb_000318_130--Hb_005147_080 Hb_002660_190 Hb_002660_190 Hb_000318_130--Hb_002660_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0265674 0.242106 0.192644 0.0315729 0.0630685 0.0365394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0907613 0.214216 0.223827 0.094972 0.598215

CAGE analysis