Hb_022213_030

Information

Type -
Description -
Location Contig22213: 29777-33072
Sequence    

Annotation

kegg
ID pop:POPTR_0013s10400g
description hypothetical protein
nr
ID XP_011009530.1
description PREDICTED: uncharacterized protein LOC105114631 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5FXE3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s10400g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022213_030 0.0 - - PREDICTED: uncharacterized protein LOC105114631 [Populus euphratica]
2 Hb_000370_040 0.1293961021 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
3 Hb_001516_050 0.1327489378 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
4 Hb_001942_020 0.1548512698 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
5 Hb_001080_150 0.1872852169 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
6 Hb_177343_010 0.1875323599 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
7 Hb_000270_710 0.1883273607 - - PREDICTED: WAT1-related protein At5g40240-like isoform X1 [Jatropha curcas]
8 Hb_002320_090 0.1916376009 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
9 Hb_000270_830 0.1918954589 - - aldehyde dehydrogenase, putative [Ricinus communis]
10 Hb_000244_260 0.1931155651 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
11 Hb_007527_040 0.194415721 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
12 Hb_000599_230 0.1979303375 - - -
13 Hb_000997_290 0.19829405 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
14 Hb_005116_140 0.201377345 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
15 Hb_002805_090 0.203720964 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_007933_030 0.2040152392 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
17 Hb_000731_290 0.2049969576 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_001105_130 0.206384649 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
19 Hb_001195_370 0.2069101004 - - -
20 Hb_004735_020 0.2070146307 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]

Gene co-expression network

sample Hb_022213_030 Hb_022213_030 Hb_000370_040 Hb_000370_040 Hb_022213_030--Hb_000370_040 Hb_001516_050 Hb_001516_050 Hb_022213_030--Hb_001516_050 Hb_001942_020 Hb_001942_020 Hb_022213_030--Hb_001942_020 Hb_001080_150 Hb_001080_150 Hb_022213_030--Hb_001080_150 Hb_177343_010 Hb_177343_010 Hb_022213_030--Hb_177343_010 Hb_000270_710 Hb_000270_710 Hb_022213_030--Hb_000270_710 Hb_000270_830 Hb_000270_830 Hb_000370_040--Hb_000270_830 Hb_000836_060 Hb_000836_060 Hb_000370_040--Hb_000836_060 Hb_000370_040--Hb_001516_050 Hb_010417_130 Hb_010417_130 Hb_000370_040--Hb_010417_130 Hb_009674_050 Hb_009674_050 Hb_000370_040--Hb_009674_050 Hb_000599_230 Hb_000599_230 Hb_001516_050--Hb_000599_230 Hb_001266_120 Hb_001266_120 Hb_001516_050--Hb_001266_120 Hb_002320_090 Hb_002320_090 Hb_001516_050--Hb_002320_090 Hb_001516_050--Hb_001080_150 Hb_001516_050--Hb_001942_020 Hb_001087_010 Hb_001087_010 Hb_001942_020--Hb_001087_010 Hb_007527_040 Hb_007527_040 Hb_001942_020--Hb_007527_040 Hb_001942_020--Hb_177343_010 Hb_163145_030 Hb_163145_030 Hb_001942_020--Hb_163145_030 Hb_001195_370 Hb_001195_370 Hb_001080_150--Hb_001195_370 Hb_062013_010 Hb_062013_010 Hb_001080_150--Hb_062013_010 Hb_000329_080 Hb_000329_080 Hb_001080_150--Hb_000329_080 Hb_007933_030 Hb_007933_030 Hb_001080_150--Hb_007933_030 Hb_000963_090 Hb_000963_090 Hb_001080_150--Hb_000963_090 Hb_078477_060 Hb_078477_060 Hb_001080_150--Hb_078477_060 Hb_000270_660 Hb_000270_660 Hb_177343_010--Hb_000270_660 Hb_177343_010--Hb_163145_030 Hb_059741_010 Hb_059741_010 Hb_177343_010--Hb_059741_010 Hb_002164_020 Hb_002164_020 Hb_177343_010--Hb_002164_020 Hb_011310_050 Hb_011310_050 Hb_177343_010--Hb_011310_050 Hb_010175_030 Hb_010175_030 Hb_177343_010--Hb_010175_030 Hb_000270_710--Hb_002320_090 Hb_000696_190 Hb_000696_190 Hb_000270_710--Hb_000696_190 Hb_006916_030 Hb_006916_030 Hb_000270_710--Hb_006916_030 Hb_000270_710--Hb_000270_830 Hb_035834_010 Hb_035834_010 Hb_000270_710--Hb_035834_010 Hb_000964_170 Hb_000964_170 Hb_000270_710--Hb_000964_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.84857 2.9896 2.93879 8.35938 0.733487 2.43416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.487129 0.076646 1.53399 5.51975 14.784

CAGE analysis