Hb_001728_110

Information

Type transcription factor
Description TF Family: ERF
Location Contig1728: 121535-122260
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15550g
description hypothetical protein
nr
ID XP_012070028.1
description PREDICTED: ethylene-responsive transcription factor ERF039-like [Jatropha curcas]
swissprot
ID Q9ZQP3
description Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1
trembl
ID A0A067L716
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001728_110 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF039-like [Jatropha curcas]
2 Hb_001421_040 0.1438820225 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 2 [Jatropha curcas]
3 Hb_003177_050 0.147451678 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Populus euphratica]
4 Hb_005488_190 0.149625763 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
5 Hb_000373_200 0.1506596416 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
6 Hb_000679_080 0.1543726574 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
7 Hb_001231_010 0.1568305175 - - calcium-binding family protein [Populus trichocarpa]
8 Hb_000618_110 0.1639312035 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
9 Hb_142663_020 0.1642079965 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
10 Hb_000327_260 0.1716499771 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000045_050 0.1719848547 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
12 Hb_009393_130 0.1720263068 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
13 Hb_004096_210 0.1723109896 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
14 Hb_002811_250 0.1728855148 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
15 Hb_000083_080 0.1740773309 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
16 Hb_002811_050 0.1747298167 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
17 Hb_009838_070 0.1760071 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
18 Hb_000544_080 0.176099102 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
19 Hb_000007_030 0.1762394435 - - PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_005181_120 0.1769776723 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001728_110 Hb_001728_110 Hb_001421_040 Hb_001421_040 Hb_001728_110--Hb_001421_040 Hb_003177_050 Hb_003177_050 Hb_001728_110--Hb_003177_050 Hb_005488_190 Hb_005488_190 Hb_001728_110--Hb_005488_190 Hb_000373_200 Hb_000373_200 Hb_001728_110--Hb_000373_200 Hb_000679_080 Hb_000679_080 Hb_001728_110--Hb_000679_080 Hb_001231_010 Hb_001231_010 Hb_001728_110--Hb_001231_010 Hb_001377_060 Hb_001377_060 Hb_001421_040--Hb_001377_060 Hb_002043_100 Hb_002043_100 Hb_001421_040--Hb_002043_100 Hb_001907_080 Hb_001907_080 Hb_001421_040--Hb_001907_080 Hb_000007_030 Hb_000007_030 Hb_001421_040--Hb_000007_030 Hb_002835_090 Hb_002835_090 Hb_001421_040--Hb_002835_090 Hb_000866_020 Hb_000866_020 Hb_003177_050--Hb_000866_020 Hb_142663_020 Hb_142663_020 Hb_003177_050--Hb_142663_020 Hb_000618_110 Hb_000618_110 Hb_003177_050--Hb_000618_110 Hb_009393_130 Hb_009393_130 Hb_003177_050--Hb_009393_130 Hb_003680_060 Hb_003680_060 Hb_003177_050--Hb_003680_060 Hb_000948_120 Hb_000948_120 Hb_003177_050--Hb_000948_120 Hb_007803_040 Hb_007803_040 Hb_005488_190--Hb_007803_040 Hb_002811_250 Hb_002811_250 Hb_005488_190--Hb_002811_250 Hb_006681_020 Hb_006681_020 Hb_005488_190--Hb_006681_020 Hb_005488_190--Hb_009393_130 Hb_002495_090 Hb_002495_090 Hb_005488_190--Hb_002495_090 Hb_000062_480 Hb_000062_480 Hb_005488_190--Hb_000062_480 Hb_000008_070 Hb_000008_070 Hb_000373_200--Hb_000008_070 Hb_001278_020 Hb_001278_020 Hb_000373_200--Hb_001278_020 Hb_001257_050 Hb_001257_050 Hb_000373_200--Hb_001257_050 Hb_001474_060 Hb_001474_060 Hb_000373_200--Hb_001474_060 Hb_000590_110 Hb_000590_110 Hb_000373_200--Hb_000590_110 Hb_005181_120 Hb_005181_120 Hb_000679_080--Hb_005181_120 Hb_000679_080--Hb_002811_250 Hb_010098_040 Hb_010098_040 Hb_000679_080--Hb_010098_040 Hb_003416_020 Hb_003416_020 Hb_000679_080--Hb_003416_020 Hb_000516_080 Hb_000516_080 Hb_000679_080--Hb_000516_080 Hb_007982_040 Hb_007982_040 Hb_000679_080--Hb_007982_040 Hb_000832_270 Hb_000832_270 Hb_001231_010--Hb_000832_270 Hb_000327_260 Hb_000327_260 Hb_001231_010--Hb_000327_260 Hb_000539_040 Hb_000539_040 Hb_001231_010--Hb_000539_040 Hb_007479_010 Hb_007479_010 Hb_001231_010--Hb_007479_010 Hb_137222_010 Hb_137222_010 Hb_001231_010--Hb_137222_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.10537 2.94725 15.7383 10.2009 0.129607 2.51192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.384641 0.604799 0 1.20391 24.2683

CAGE analysis