Hb_142663_020

Information

Type -
Description -
Location Contig142663: 22235-27589
Sequence    

Annotation

kegg
ID rcu:RCOM_0412680
description hypothetical protein
nr
ID XP_012087674.1
description PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067JPL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25329 PE=4 SV=1
Gene Ontology
ID GO:0016740
description o-fucosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11299: 22331-27682
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142663_020 0.0 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
2 Hb_000834_060 0.0919487516 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000684_200 0.0985990063 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
4 Hb_002811_250 0.1002348992 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
5 Hb_010557_010 0.1042700304 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
6 Hb_005181_120 0.1179243971 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_003177_050 0.1186506182 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Populus euphratica]
8 Hb_000264_280 0.1207605564 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
9 Hb_009393_130 0.1263331588 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
10 Hb_000679_080 0.1273053304 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
11 Hb_000045_050 0.1294145754 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
12 Hb_172426_060 0.1309586144 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
13 Hb_003948_020 0.1318262855 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
14 Hb_003605_060 0.1324609696 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
15 Hb_000703_070 0.1331158213 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
16 Hb_010098_040 0.1332117434 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
17 Hb_003680_060 0.133510844 - - hypothetical protein VITISV_022322 [Vitis vinifera]
18 Hb_002811_310 0.1346201165 - - hypothetical protein VITISV_025505 [Vitis vinifera]
19 Hb_000803_170 0.1348584416 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
20 Hb_004837_100 0.1354530022 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_142663_020 Hb_142663_020 Hb_000834_060 Hb_000834_060 Hb_142663_020--Hb_000834_060 Hb_000684_200 Hb_000684_200 Hb_142663_020--Hb_000684_200 Hb_002811_250 Hb_002811_250 Hb_142663_020--Hb_002811_250 Hb_010557_010 Hb_010557_010 Hb_142663_020--Hb_010557_010 Hb_005181_120 Hb_005181_120 Hb_142663_020--Hb_005181_120 Hb_003177_050 Hb_003177_050 Hb_142663_020--Hb_003177_050 Hb_000479_210 Hb_000479_210 Hb_000834_060--Hb_000479_210 Hb_000834_060--Hb_000684_200 Hb_000834_060--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_000834_060--Hb_010098_040 Hb_000834_060--Hb_010557_010 Hb_000684_200--Hb_010557_010 Hb_004162_270 Hb_004162_270 Hb_000684_200--Hb_004162_270 Hb_000684_200--Hb_002811_250 Hb_004837_100 Hb_004837_100 Hb_000684_200--Hb_004837_100 Hb_000684_200--Hb_010098_040 Hb_000684_200--Hb_005181_120 Hb_000193_220 Hb_000193_220 Hb_002811_250--Hb_000193_220 Hb_002811_250--Hb_010557_010 Hb_000803_170 Hb_000803_170 Hb_002811_250--Hb_000803_170 Hb_002811_250--Hb_005181_120 Hb_002811_250--Hb_010098_040 Hb_000679_080 Hb_000679_080 Hb_002811_250--Hb_000679_080 Hb_002411_100 Hb_002411_100 Hb_010557_010--Hb_002411_100 Hb_000703_070 Hb_000703_070 Hb_010557_010--Hb_000703_070 Hb_010557_010--Hb_000803_170 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050 Hb_005181_120--Hb_010098_040 Hb_000516_080 Hb_000516_080 Hb_005181_120--Hb_000516_080 Hb_005181_120--Hb_000679_080 Hb_007982_040 Hb_007982_040 Hb_005181_120--Hb_007982_040 Hb_000108_150 Hb_000108_150 Hb_005181_120--Hb_000108_150 Hb_000866_020 Hb_000866_020 Hb_003177_050--Hb_000866_020 Hb_000618_110 Hb_000618_110 Hb_003177_050--Hb_000618_110 Hb_003177_050--Hb_009393_130 Hb_003680_060 Hb_003680_060 Hb_003177_050--Hb_003680_060 Hb_000948_120 Hb_000948_120 Hb_003177_050--Hb_000948_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23114 1.53745 9.39092 4.49436 0.130023 0.352014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.426281 1.41794 0.435183 1.26015 12.7756

CAGE analysis