Hb_001907_080

Information

Type -
Description -
Location Contig1907: 168370-172047
Sequence    

Annotation

kegg
ID rcu:RCOM_0963530
description hypothetical protein
nr
ID XP_012065617.1
description PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L533
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16868 PE=4 SV=1
Gene Ontology
ID GO:0009941
description PREDICTED: uncharacterized protein LOC105628749

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19017: 168352-171949 , PASA_asmbl_19018: 168401-171988 , PASA_asmbl_19019: 168932-169988
cDNA
(Sanger)
(ID:Location)		 038_I07.ab1: 168352-169189

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001907_080 0.0 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
2 Hb_000193_220 0.1057271658 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
3 Hb_002043_100 0.1221089782 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009692_040 0.1233811308 - - PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_010721_020 0.1239791032 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
6 Hb_002960_040 0.1250429435 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
7 Hb_000118_090 0.1282948149 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
8 Hb_001377_060 0.1296616865 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
9 Hb_002811_250 0.1341389653 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
10 Hb_005488_190 0.1369332534 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
11 Hb_004712_200 0.1389092232 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
12 Hb_004055_160 0.142037712 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
13 Hb_007982_040 0.1424600487 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
14 Hb_000679_080 0.1462972888 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
15 Hb_000966_040 0.1468661177 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
16 Hb_002783_070 0.1510162096 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
17 Hb_001348_090 0.1510891551 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
18 Hb_001365_030 0.1523777181 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
19 Hb_000035_340 0.1531745539 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005977_060 0.156450724 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001907_080 Hb_001907_080 Hb_000193_220 Hb_000193_220 Hb_001907_080--Hb_000193_220 Hb_002043_100 Hb_002043_100 Hb_001907_080--Hb_002043_100 Hb_009692_040 Hb_009692_040 Hb_001907_080--Hb_009692_040 Hb_010721_020 Hb_010721_020 Hb_001907_080--Hb_010721_020 Hb_002960_040 Hb_002960_040 Hb_001907_080--Hb_002960_040 Hb_000118_090 Hb_000118_090 Hb_001907_080--Hb_000118_090 Hb_000193_220--Hb_010721_020 Hb_002811_250 Hb_002811_250 Hb_000193_220--Hb_002811_250 Hb_000803_170 Hb_000803_170 Hb_000193_220--Hb_000803_170 Hb_007982_040 Hb_007982_040 Hb_000193_220--Hb_007982_040 Hb_000193_220--Hb_000118_090 Hb_000966_040 Hb_000966_040 Hb_000193_220--Hb_000966_040 Hb_001421_040 Hb_001421_040 Hb_002043_100--Hb_001421_040 Hb_069512_010 Hb_069512_010 Hb_002043_100--Hb_069512_010 Hb_001377_060 Hb_001377_060 Hb_002043_100--Hb_001377_060 Hb_016687_010 Hb_016687_010 Hb_002043_100--Hb_016687_010 Hb_005488_190 Hb_005488_190 Hb_002043_100--Hb_005488_190 Hb_009692_040--Hb_007982_040 Hb_032631_030 Hb_032631_030 Hb_009692_040--Hb_032631_030 Hb_004242_170 Hb_004242_170 Hb_009692_040--Hb_004242_170 Hb_001053_020 Hb_001053_020 Hb_009692_040--Hb_001053_020 Hb_005977_060 Hb_005977_060 Hb_009692_040--Hb_005977_060 Hb_000441_050 Hb_000441_050 Hb_009692_040--Hb_000441_050 Hb_010721_020--Hb_002811_250 Hb_010721_020--Hb_000118_090 Hb_010721_020--Hb_007982_040 Hb_000045_050 Hb_000045_050 Hb_010721_020--Hb_000045_050 Hb_000317_180 Hb_000317_180 Hb_010721_020--Hb_000317_180 Hb_002783_070 Hb_002783_070 Hb_002960_040--Hb_002783_070 Hb_000976_130 Hb_000976_130 Hb_002960_040--Hb_000976_130 Hb_002960_040--Hb_000966_040 Hb_002960_040--Hb_009692_040 Hb_002960_040--Hb_000193_220 Hb_011649_010 Hb_011649_010 Hb_000118_090--Hb_011649_010 Hb_000118_090--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000118_090--Hb_071079_020 Hb_000544_080 Hb_000544_080 Hb_000118_090--Hb_000544_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.98737 7.17069 47.3553 20.3003 5.95374 9.26606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.30035 1.34509 0.781238 14.603 92.3656

CAGE analysis