Hb_002960_040

Information

Type -
Description -
Location Contig2960: 20573-25555
Sequence    

Annotation

kegg
ID rcu:RCOM_1598250
description endoplasmin, putative
nr
ID XP_012073780.1
description PREDICTED: endoplasmin homolog [Jatropha curcas]
swissprot
ID P35016
description Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1
trembl
ID A0A067KPG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08199 PE=3 SV=1
Gene Ontology
ID GO:0005634
description endoplasmin homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30944: 20513-25546
cDNA
(Sanger)
(ID:Location)		 011_O14.ab1: 24151-25546

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_040 0.0 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
2 Hb_002783_070 0.0965512625 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
3 Hb_000976_130 0.1202800979 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
4 Hb_000966_040 0.1238893433 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
5 Hb_001907_080 0.1250429435 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
6 Hb_009692_040 0.1252165875 - - PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000193_220 0.1294468879 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
8 Hb_001053_020 0.1331900682 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
9 Hb_001252_030 0.1346785982 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
10 Hb_010721_020 0.1364853756 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
11 Hb_007982_040 0.1377874198 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
12 Hb_004712_200 0.1383909995 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
13 Hb_000441_050 0.1399096036 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
14 Hb_005977_060 0.1426588666 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000975_050 0.1440741837 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
16 Hb_000118_090 0.1502191649 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
17 Hb_004242_170 0.1503000111 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
18 Hb_011649_010 0.1512203847 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
19 Hb_008616_040 0.1518340812 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
20 Hb_010098_040 0.1536103162 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]

Gene co-expression network

sample Hb_002960_040 Hb_002960_040 Hb_002783_070 Hb_002783_070 Hb_002960_040--Hb_002783_070 Hb_000976_130 Hb_000976_130 Hb_002960_040--Hb_000976_130 Hb_000966_040 Hb_000966_040 Hb_002960_040--Hb_000966_040 Hb_001907_080 Hb_001907_080 Hb_002960_040--Hb_001907_080 Hb_009692_040 Hb_009692_040 Hb_002960_040--Hb_009692_040 Hb_000193_220 Hb_000193_220 Hb_002960_040--Hb_000193_220 Hb_021409_190 Hb_021409_190 Hb_002783_070--Hb_021409_190 Hb_010984_010 Hb_010984_010 Hb_002783_070--Hb_010984_010 Hb_000803_240 Hb_000803_240 Hb_002783_070--Hb_000803_240 Hb_000803_220 Hb_000803_220 Hb_002783_070--Hb_000803_220 Hb_008616_040 Hb_008616_040 Hb_002783_070--Hb_008616_040 Hb_000976_130--Hb_008616_040 Hb_001053_020 Hb_001053_020 Hb_000976_130--Hb_001053_020 Hb_000005_100 Hb_000005_100 Hb_000976_130--Hb_000005_100 Hb_001250_020 Hb_001250_020 Hb_000976_130--Hb_001250_020 Hb_004242_170 Hb_004242_170 Hb_000976_130--Hb_004242_170 Hb_012799_190 Hb_012799_190 Hb_000976_130--Hb_012799_190 Hb_000975_050 Hb_000975_050 Hb_000966_040--Hb_000975_050 Hb_004712_200 Hb_004712_200 Hb_000966_040--Hb_004712_200 Hb_000966_040--Hb_000193_220 Hb_010098_040 Hb_010098_040 Hb_000966_040--Hb_010098_040 Hb_004109_130 Hb_004109_130 Hb_000966_040--Hb_004109_130 Hb_000208_270 Hb_000208_270 Hb_000966_040--Hb_000208_270 Hb_001907_080--Hb_000193_220 Hb_002043_100 Hb_002043_100 Hb_001907_080--Hb_002043_100 Hb_001907_080--Hb_009692_040 Hb_010721_020 Hb_010721_020 Hb_001907_080--Hb_010721_020 Hb_000118_090 Hb_000118_090 Hb_001907_080--Hb_000118_090 Hb_007982_040 Hb_007982_040 Hb_009692_040--Hb_007982_040 Hb_032631_030 Hb_032631_030 Hb_009692_040--Hb_032631_030 Hb_009692_040--Hb_004242_170 Hb_009692_040--Hb_001053_020 Hb_005977_060 Hb_005977_060 Hb_009692_040--Hb_005977_060 Hb_000441_050 Hb_000441_050 Hb_009692_040--Hb_000441_050 Hb_000193_220--Hb_010721_020 Hb_002811_250 Hb_002811_250 Hb_000193_220--Hb_002811_250 Hb_000803_170 Hb_000803_170 Hb_000193_220--Hb_000803_170 Hb_000193_220--Hb_007982_040 Hb_000193_220--Hb_000118_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.84124 44.1426 136.861 78.1602 41.0588 13.3289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.26997 5.4229 10.8286 55.683 337.928

CAGE analysis