Hb_002005_050

Information

Type -
Description -
Location Contig2005: 61582-62917
Sequence    

Annotation

kegg
ID rcu:RCOM_0634400
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_002519744.1
description hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
swissprot
ID Q9ZU91
description Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2
trembl
ID B9S175
description Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis GN=RCOM_0634400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002005_050 0.0 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
2 Hb_158247_010 0.1201101297 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006970_030 0.1237071575 - - synaptotagmin, putative [Ricinus communis]
4 Hb_000161_010 0.125753112 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
5 Hb_005305_070 0.1283326945 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
6 Hb_001699_140 0.1293544916 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
7 Hb_000101_330 0.1306461275 - - -
8 Hb_001691_170 0.1331979106 - - PREDICTED: callose synthase 12-like [Glycine max]
9 Hb_003494_090 0.1337453897 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
10 Hb_003536_020 0.1337808147 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
11 Hb_000483_440 0.1352057689 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000694_080 0.1359015279 - - phosphoribulose kinase, putative [Ricinus communis]
13 Hb_000017_210 0.1365081998 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
14 Hb_087599_010 0.1368440118 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
15 Hb_007477_060 0.1373539291 - - unknown [Medicago truncatula]
16 Hb_005977_040 0.1375125677 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
17 Hb_003777_080 0.1382707271 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
18 Hb_001564_120 0.1391162922 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
19 Hb_000482_180 0.1402015383 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
20 Hb_000077_380 0.1405190972 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]

Gene co-expression network

sample Hb_002005_050 Hb_002005_050 Hb_158247_010 Hb_158247_010 Hb_002005_050--Hb_158247_010 Hb_006970_030 Hb_006970_030 Hb_002005_050--Hb_006970_030 Hb_000161_010 Hb_000161_010 Hb_002005_050--Hb_000161_010 Hb_005305_070 Hb_005305_070 Hb_002005_050--Hb_005305_070 Hb_001699_140 Hb_001699_140 Hb_002005_050--Hb_001699_140 Hb_000101_330 Hb_000101_330 Hb_002005_050--Hb_000101_330 Hb_000261_380 Hb_000261_380 Hb_158247_010--Hb_000261_380 Hb_002375_030 Hb_002375_030 Hb_158247_010--Hb_002375_030 Hb_001006_040 Hb_001006_040 Hb_158247_010--Hb_001006_040 Hb_000881_070 Hb_000881_070 Hb_158247_010--Hb_000881_070 Hb_003632_020 Hb_003632_020 Hb_158247_010--Hb_003632_020 Hb_153258_040 Hb_153258_040 Hb_006970_030--Hb_153258_040 Hb_003777_080 Hb_003777_080 Hb_006970_030--Hb_003777_080 Hb_000140_460 Hb_000140_460 Hb_006970_030--Hb_000140_460 Hb_004970_060 Hb_004970_060 Hb_006970_030--Hb_004970_060 Hb_000950_020 Hb_000950_020 Hb_006970_030--Hb_000950_020 Hb_000049_100 Hb_000049_100 Hb_006970_030--Hb_000049_100 Hb_000077_380 Hb_000077_380 Hb_000161_010--Hb_000077_380 Hb_005977_040 Hb_005977_040 Hb_000161_010--Hb_005977_040 Hb_000161_010--Hb_000101_330 Hb_002609_140 Hb_002609_140 Hb_000161_010--Hb_002609_140 Hb_001584_210 Hb_001584_210 Hb_000161_010--Hb_001584_210 Hb_007477_060 Hb_007477_060 Hb_000161_010--Hb_007477_060 Hb_005305_070--Hb_001699_140 Hb_007904_110 Hb_007904_110 Hb_005305_070--Hb_007904_110 Hb_000017_210 Hb_000017_210 Hb_005305_070--Hb_000017_210 Hb_000906_080 Hb_000906_080 Hb_005305_070--Hb_000906_080 Hb_000483_440 Hb_000483_440 Hb_005305_070--Hb_000483_440 Hb_000482_180 Hb_000482_180 Hb_005305_070--Hb_000482_180 Hb_001699_140--Hb_000101_330 Hb_001699_140--Hb_007477_060 Hb_000270_090 Hb_000270_090 Hb_001699_140--Hb_000270_090 Hb_005054_120 Hb_005054_120 Hb_001699_140--Hb_005054_120 Hb_000460_040 Hb_000460_040 Hb_001699_140--Hb_000460_040 Hb_000101_330--Hb_007477_060 Hb_006570_030 Hb_006570_030 Hb_000101_330--Hb_006570_030 Hb_005063_030 Hb_005063_030 Hb_000101_330--Hb_005063_030 Hb_001028_040 Hb_001028_040 Hb_000101_330--Hb_001028_040 Hb_002368_060 Hb_002368_060 Hb_000101_330--Hb_002368_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0612539 0.102813 0.569283 0.269498 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0449436 1.22033

CAGE analysis