Hb_158247_010

Information

Type -
Description -
Location Contig158247: 26903-29573
Sequence    

Annotation

kegg
ID rcu:RCOM_0737410
description hypothetical protein
nr
ID XP_002527560.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M2H5
description MATH domain and coiled-coil domain-containing protein At3g58410 OS=Arabidopsis thaliana GN=At3g58410 PE=3 SV=2
trembl
ID B9SNJ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0737410 PE=4 SV=1
Gene Ontology
ID GO:0008233
description ubiquitin carboxyl-terminal hydrolase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158247_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000261_380 0.0888079182 transcription factor TF Family: ERF hypothetical protein RCOM_1019500 [Ricinus communis]
3 Hb_002375_030 0.1171968558 - - F-box family protein [Populus trichocarpa]
4 Hb_002005_050 0.1201101297 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
5 Hb_001006_040 0.1233475323 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
6 Hb_000881_070 0.1249981232 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_003632_020 0.1256122772 - - calcium-binding family protein [Populus trichocarpa]
8 Hb_001292_030 0.1256799531 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
9 Hb_002785_030 0.1257227283 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
10 Hb_001028_040 0.1292288297 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
11 Hb_001682_020 0.1307843653 - - PREDICTED: uncharacterized protein LOC105628366 [Jatropha curcas]
12 Hb_001277_350 0.1316332478 - - early light-induced protein, putative [Ricinus communis]
13 Hb_001975_100 0.1320170629 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
14 Hb_000230_420 0.1327574255 - - GS [Hevea brasiliensis subsp. brasiliensis]
15 Hb_006570_030 0.13283843 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
16 Hb_002368_060 0.1338039487 - - conserved hypothetical protein [Ricinus communis]
17 Hb_116349_020 0.1341460849 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
18 Hb_005063_030 0.1347000976 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_146255_030 0.134706105 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
20 Hb_001322_120 0.1354506884 - - nutrient reservoir, putative [Ricinus communis]

Gene co-expression network

sample Hb_158247_010 Hb_158247_010 Hb_000261_380 Hb_000261_380 Hb_158247_010--Hb_000261_380 Hb_002375_030 Hb_002375_030 Hb_158247_010--Hb_002375_030 Hb_002005_050 Hb_002005_050 Hb_158247_010--Hb_002005_050 Hb_001006_040 Hb_001006_040 Hb_158247_010--Hb_001006_040 Hb_000881_070 Hb_000881_070 Hb_158247_010--Hb_000881_070 Hb_003632_020 Hb_003632_020 Hb_158247_010--Hb_003632_020 Hb_000589_340 Hb_000589_340 Hb_000261_380--Hb_000589_340 Hb_002785_040 Hb_002785_040 Hb_000261_380--Hb_002785_040 Hb_000230_420 Hb_000230_420 Hb_000261_380--Hb_000230_420 Hb_000320_370 Hb_000320_370 Hb_000261_380--Hb_000320_370 Hb_000139_310 Hb_000139_310 Hb_000261_380--Hb_000139_310 Hb_000450_050 Hb_000450_050 Hb_000261_380--Hb_000450_050 Hb_008195_070 Hb_008195_070 Hb_002375_030--Hb_008195_070 Hb_002375_030--Hb_001006_040 Hb_001292_030 Hb_001292_030 Hb_002375_030--Hb_001292_030 Hb_001975_100 Hb_001975_100 Hb_002375_030--Hb_001975_100 Hb_000254_130 Hb_000254_130 Hb_002375_030--Hb_000254_130 Hb_000049_100 Hb_000049_100 Hb_002375_030--Hb_000049_100 Hb_006970_030 Hb_006970_030 Hb_002005_050--Hb_006970_030 Hb_000161_010 Hb_000161_010 Hb_002005_050--Hb_000161_010 Hb_005305_070 Hb_005305_070 Hb_002005_050--Hb_005305_070 Hb_001699_140 Hb_001699_140 Hb_002005_050--Hb_001699_140 Hb_000101_330 Hb_000101_330 Hb_002005_050--Hb_000101_330 Hb_002785_030 Hb_002785_030 Hb_001006_040--Hb_002785_030 Hb_001006_040--Hb_001292_030 Hb_001006_040--Hb_001975_100 Hb_001322_120 Hb_001322_120 Hb_001006_040--Hb_001322_120 Hb_005063_030 Hb_005063_030 Hb_001006_040--Hb_005063_030 Hb_001028_040 Hb_001028_040 Hb_001006_040--Hb_001028_040 Hb_003020_120 Hb_003020_120 Hb_000881_070--Hb_003020_120 Hb_003120_020 Hb_003120_020 Hb_000881_070--Hb_003120_020 Hb_020648_030 Hb_020648_030 Hb_000881_070--Hb_020648_030 Hb_010326_020 Hb_010326_020 Hb_000881_070--Hb_010326_020 Hb_000881_070--Hb_002375_030 Hb_001717_060 Hb_001717_060 Hb_000881_070--Hb_001717_060 Hb_003632_020--Hb_010326_020 Hb_011724_040 Hb_011724_040 Hb_003632_020--Hb_011724_040 Hb_002121_050 Hb_002121_050 Hb_003632_020--Hb_002121_050 Hb_003632_020--Hb_002375_030 Hb_001277_350 Hb_001277_350 Hb_003632_020--Hb_001277_350 Hb_003632_020--Hb_008195_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0863559 0.0732188 0.89 0.412256 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.52566

CAGE analysis