Hb_000261_380

Information

Type transcription factor
Description TF Family: ERF
Location Contig261: 322128-323471
Sequence    

Annotation

kegg
ID rcu:RCOM_1019500
description hypothetical protein
nr
ID XP_002518093.1
description hypothetical protein RCOM_1019500 [Ricinus communis]
swissprot
ID Q9SVQ0
description Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1
trembl
ID B9RWH4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1019500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_380 0.0 transcription factor TF Family: ERF hypothetical protein RCOM_1019500 [Ricinus communis]
2 Hb_000589_340 0.0756472662 - - unknown [Populus trichocarpa x Populus deltoides]
3 Hb_002785_040 0.080047367 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
4 Hb_000230_420 0.0843626827 - - GS [Hevea brasiliensis subsp. brasiliensis]
5 Hb_000320_370 0.0845825641 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
6 Hb_000139_310 0.0851886359 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
7 Hb_000450_050 0.0865765845 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
8 Hb_158247_010 0.0888079182 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001292_030 0.0908576721 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
10 Hb_001416_130 0.0915825952 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005276_080 0.0915865215 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
12 Hb_003747_090 0.0923613173 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_000531_100 0.0931697258 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
14 Hb_013405_110 0.0938279326 - - multidrug resistance pump, putative [Ricinus communis]
15 Hb_003020_120 0.0938379357 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
16 Hb_006570_030 0.0950075959 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
17 Hb_007044_270 0.0951021854 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
18 Hb_001006_160 0.0953128546 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_003038_060 0.0953201591 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
20 Hb_001028_040 0.0955926164 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]

Gene co-expression network

sample Hb_000261_380 Hb_000261_380 Hb_000589_340 Hb_000589_340 Hb_000261_380--Hb_000589_340 Hb_002785_040 Hb_002785_040 Hb_000261_380--Hb_002785_040 Hb_000230_420 Hb_000230_420 Hb_000261_380--Hb_000230_420 Hb_000320_370 Hb_000320_370 Hb_000261_380--Hb_000320_370 Hb_000139_310 Hb_000139_310 Hb_000261_380--Hb_000139_310 Hb_000450_050 Hb_000450_050 Hb_000261_380--Hb_000450_050 Hb_000589_340--Hb_000139_310 Hb_001416_130 Hb_001416_130 Hb_000589_340--Hb_001416_130 Hb_000589_340--Hb_000450_050 Hb_006570_030 Hb_006570_030 Hb_000589_340--Hb_006570_030 Hb_005276_080 Hb_005276_080 Hb_000589_340--Hb_005276_080 Hb_000589_340--Hb_002785_040 Hb_003747_090 Hb_003747_090 Hb_002785_040--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_002785_040--Hb_005375_090 Hb_013405_110 Hb_013405_110 Hb_002785_040--Hb_013405_110 Hb_086022_020 Hb_086022_020 Hb_002785_040--Hb_086022_020 Hb_004129_170 Hb_004129_170 Hb_002785_040--Hb_004129_170 Hb_002785_040--Hb_000320_370 Hb_001292_030 Hb_001292_030 Hb_000230_420--Hb_001292_030 Hb_000531_100 Hb_000531_100 Hb_000230_420--Hb_000531_100 Hb_002534_020 Hb_002534_020 Hb_000230_420--Hb_002534_020 Hb_000083_180 Hb_000083_180 Hb_000230_420--Hb_000083_180 Hb_001277_350 Hb_001277_350 Hb_000230_420--Hb_001277_350 Hb_003038_060 Hb_003038_060 Hb_000230_420--Hb_003038_060 Hb_002809_030 Hb_002809_030 Hb_000320_370--Hb_002809_030 Hb_000320_370--Hb_086022_020 Hb_000352_230 Hb_000352_230 Hb_000320_370--Hb_000352_230 Hb_008748_050 Hb_008748_050 Hb_000320_370--Hb_008748_050 Hb_000320_370--Hb_000589_340 Hb_000139_310--Hb_001416_130 Hb_000139_310--Hb_006570_030 Hb_001028_040 Hb_001028_040 Hb_000139_310--Hb_001028_040 Hb_002368_060 Hb_002368_060 Hb_000139_310--Hb_002368_060 Hb_000139_310--Hb_001292_030 Hb_001621_090 Hb_001621_090 Hb_000450_050--Hb_001621_090 Hb_005000_120 Hb_005000_120 Hb_000450_050--Hb_005000_120 Hb_000450_050--Hb_005276_080 Hb_006665_020 Hb_006665_020 Hb_000450_050--Hb_006665_020 Hb_000450_050--Hb_008748_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0155546 0.028405 0.523542 0.174212 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.987686

CAGE analysis