Hb_023547_020

Information

Type -
Description -
Location Contig23547: 13251-14774
Sequence    

Annotation

kegg
ID rcu:RCOM_1206790
description hypothetical protein
nr
ID XP_002530845.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9SXY8
description CASP-like protein 4D1 OS=Ricinus communis GN=RCOM_1206790 PE=3 SV=1
trembl
ID D7TLT6
description CASP-like protein OS=Vitis vinifera GN=VIT_13s0019g01390 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 4d1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24638: 7802-13750
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023547_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005436_030 0.0859751732 - - PREDICTED: UDP-glycosyltransferase 74E1-like [Jatropha curcas]
3 Hb_001538_040 0.1043315032 - - PREDICTED: uncharacterized protein LOC104228304 [Nicotiana sylvestris]
4 Hb_060822_010 0.1204792266 - - -
5 Hb_064106_010 0.1277478487 - - PREDICTED: uncharacterized protein LOC104878249 [Vitis vinifera]
6 Hb_006992_030 0.145837772 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
7 Hb_005831_010 0.1548787703 - - hypothetical protein JCGZ_04003 [Jatropha curcas]
8 Hb_003494_180 0.1703156431 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
9 Hb_002845_020 0.1825703429 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
10 Hb_006916_180 0.1880267273 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
11 Hb_005595_030 0.1914876277 - - hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
12 Hb_005765_020 0.1979866141 - - -
13 Hb_057321_010 0.1982804751 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_001355_050 0.2007433193 - - -
15 Hb_000987_160 0.2034436491 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
16 Hb_001534_040 0.208756515 - - hypothetical protein JCGZ_08436 [Jatropha curcas]
17 Hb_089568_010 0.2098053928 - - ferric reductase oxidase [Manihot esculenta]
18 Hb_000574_030 0.2120669634 desease resistance Gene Name: Glyco_hydro_38 Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_000375_250 0.2156935103 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
20 Hb_000500_360 0.2200247788 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_023547_020 Hb_023547_020 Hb_005436_030 Hb_005436_030 Hb_023547_020--Hb_005436_030 Hb_001538_040 Hb_001538_040 Hb_023547_020--Hb_001538_040 Hb_060822_010 Hb_060822_010 Hb_023547_020--Hb_060822_010 Hb_064106_010 Hb_064106_010 Hb_023547_020--Hb_064106_010 Hb_006992_030 Hb_006992_030 Hb_023547_020--Hb_006992_030 Hb_005831_010 Hb_005831_010 Hb_023547_020--Hb_005831_010 Hb_005436_030--Hb_001538_040 Hb_005436_030--Hb_060822_010 Hb_005436_030--Hb_064106_010 Hb_003494_180 Hb_003494_180 Hb_005436_030--Hb_003494_180 Hb_005436_030--Hb_006992_030 Hb_001538_040--Hb_060822_010 Hb_000149_120 Hb_000149_120 Hb_001538_040--Hb_000149_120 Hb_024570_020 Hb_024570_020 Hb_001538_040--Hb_024570_020 Hb_040963_010 Hb_040963_010 Hb_001538_040--Hb_040963_010 Hb_060822_010--Hb_024570_020 Hb_060822_010--Hb_000149_120 Hb_001534_040 Hb_001534_040 Hb_060822_010--Hb_001534_040 Hb_064106_010--Hb_003494_180 Hb_002845_020 Hb_002845_020 Hb_064106_010--Hb_002845_020 Hb_064106_010--Hb_001538_040 Hb_016637_020 Hb_016637_020 Hb_064106_010--Hb_016637_020 Hb_001355_050 Hb_001355_050 Hb_006992_030--Hb_001355_050 Hb_003927_020 Hb_003927_020 Hb_006992_030--Hb_003927_020 Hb_005765_020 Hb_005765_020 Hb_006992_030--Hb_005765_020 Hb_005595_030 Hb_005595_030 Hb_006992_030--Hb_005595_030 Hb_001880_020 Hb_001880_020 Hb_006992_030--Hb_001880_020 Hb_005614_030 Hb_005614_030 Hb_005831_010--Hb_005614_030 Hb_005831_010--Hb_001538_040 Hb_005831_010--Hb_005436_030 Hb_003050_010 Hb_003050_010 Hb_005831_010--Hb_003050_010 Hb_000987_160 Hb_000987_160 Hb_005831_010--Hb_000987_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0904882 0.168679 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.250075 0.322292

CAGE analysis