Hb_001538_040

Information

Type -
Description -
Location Contig1538: 69743-76099
Sequence    

Annotation

kegg
ID brp:103848430
description DNA-binding protein HEXBP-like
nr
ID XP_009779049.1
description PREDICTED: uncharacterized protein LOC104228304 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M1AL36
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009723 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001538_040 0.0 - - PREDICTED: uncharacterized protein LOC104228304 [Nicotiana sylvestris]
2 Hb_060822_010 0.0807263518 - - -
3 Hb_005436_030 0.0887796467 - - PREDICTED: UDP-glycosyltransferase 74E1-like [Jatropha curcas]
4 Hb_023547_020 0.1043315032 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000149_120 0.1433055758 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
6 Hb_024570_020 0.1508935752 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
7 Hb_040963_010 0.1519653497 - - PREDICTED: polyneuridine-aldehyde esterase-like [Populus euphratica]
8 Hb_005831_010 0.155848379 - - hypothetical protein JCGZ_04003 [Jatropha curcas]
9 Hb_064106_010 0.1598443179 - - PREDICTED: uncharacterized protein LOC104878249 [Vitis vinifera]
10 Hb_007382_070 0.1852347374 - - PREDICTED: MAPK-interacting and spindle-stabilizing protein-like [Jatropha curcas]
11 Hb_003494_180 0.1913477788 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
12 Hb_136546_010 0.1949807176 - - PREDICTED: wall-associated receptor kinase-like 1, partial [Populus euphratica]
13 Hb_005614_030 0.1992302217 - - PREDICTED: transcription factor SCREAM2-like isoform X1 [Jatropha curcas]
14 Hb_006120_020 0.1992695716 - - -
15 Hb_006992_030 0.2074109322 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
16 Hb_005618_110 0.2077341739 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_001388_020 0.2106262116 - - PREDICTED: F-box/kelch-repeat protein SKIP20 [Jatropha curcas]
18 Hb_148121_030 0.2163947699 - - PREDICTED: zinc-finger homeodomain protein 14 [Gossypium raimondii]
19 Hb_002928_220 0.2194470306 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
20 Hb_057321_010 0.2194816619 - - receptor serine/threonine kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001538_040 Hb_001538_040 Hb_060822_010 Hb_060822_010 Hb_001538_040--Hb_060822_010 Hb_005436_030 Hb_005436_030 Hb_001538_040--Hb_005436_030 Hb_023547_020 Hb_023547_020 Hb_001538_040--Hb_023547_020 Hb_000149_120 Hb_000149_120 Hb_001538_040--Hb_000149_120 Hb_024570_020 Hb_024570_020 Hb_001538_040--Hb_024570_020 Hb_040963_010 Hb_040963_010 Hb_001538_040--Hb_040963_010 Hb_060822_010--Hb_005436_030 Hb_060822_010--Hb_023547_020 Hb_060822_010--Hb_024570_020 Hb_060822_010--Hb_000149_120 Hb_001534_040 Hb_001534_040 Hb_060822_010--Hb_001534_040 Hb_005436_030--Hb_023547_020 Hb_064106_010 Hb_064106_010 Hb_005436_030--Hb_064106_010 Hb_003494_180 Hb_003494_180 Hb_005436_030--Hb_003494_180 Hb_006992_030 Hb_006992_030 Hb_005436_030--Hb_006992_030 Hb_023547_020--Hb_064106_010 Hb_023547_020--Hb_006992_030 Hb_005831_010 Hb_005831_010 Hb_023547_020--Hb_005831_010 Hb_006120_020 Hb_006120_020 Hb_000149_120--Hb_006120_020 Hb_000149_120--Hb_040963_010 Hb_002928_220 Hb_002928_220 Hb_000149_120--Hb_002928_220 Hb_007382_070 Hb_007382_070 Hb_000149_120--Hb_007382_070 Hb_000149_120--Hb_024570_020 Hb_006970_100 Hb_006970_100 Hb_000149_120--Hb_006970_100 Hb_114025_010 Hb_114025_010 Hb_024570_020--Hb_114025_010 Hb_024570_020--Hb_006120_020 Hb_002811_330 Hb_002811_330 Hb_024570_020--Hb_002811_330 Hb_148121_030 Hb_148121_030 Hb_040963_010--Hb_148121_030 Hb_005618_110 Hb_005618_110 Hb_040963_010--Hb_005618_110 Hb_001388_020 Hb_001388_020 Hb_040963_010--Hb_001388_020 Hb_040963_010--Hb_002928_220 Hb_002740_170 Hb_002740_170 Hb_040963_010--Hb_002740_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0349608 0.0498138 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.106265 0.0775361

CAGE analysis