Hb_060822_010

Information

Type -
Description -
Location Contig60822: 119-616
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50877: 252-598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060822_010 0.0 - - -
2 Hb_001538_040 0.0807263518 - - PREDICTED: uncharacterized protein LOC104228304 [Nicotiana sylvestris]
3 Hb_005436_030 0.1002397451 - - PREDICTED: UDP-glycosyltransferase 74E1-like [Jatropha curcas]
4 Hb_023547_020 0.1204792266 - - conserved hypothetical protein [Ricinus communis]
5 Hb_024570_020 0.1506676867 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
6 Hb_000149_120 0.1518822387 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
7 Hb_001534_040 0.1750995117 - - hypothetical protein JCGZ_08436 [Jatropha curcas]
8 Hb_064106_010 0.1756893464 - - PREDICTED: uncharacterized protein LOC104878249 [Vitis vinifera]
9 Hb_007382_070 0.1844768784 - - PREDICTED: MAPK-interacting and spindle-stabilizing protein-like [Jatropha curcas]
10 Hb_005831_010 0.1894649246 - - hypothetical protein JCGZ_04003 [Jatropha curcas]
11 Hb_006120_020 0.1944153683 - - -
12 Hb_000465_180 0.195070537 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
13 Hb_006992_030 0.2028500664 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
14 Hb_040963_010 0.2028609385 - - PREDICTED: polyneuridine-aldehyde esterase-like [Populus euphratica]
15 Hb_142051_010 0.2083930065 - - -
16 Hb_002809_090 0.2099329219 - - -
17 Hb_161728_010 0.2131025132 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
18 Hb_000457_130 0.2133893928 - - hypothetical protein AALP_AA3G009100 [Arabis alpina]
19 Hb_001571_020 0.2133982809 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
20 Hb_029510_080 0.2142805536 - - -

Gene co-expression network

sample Hb_060822_010 Hb_060822_010 Hb_001538_040 Hb_001538_040 Hb_060822_010--Hb_001538_040 Hb_005436_030 Hb_005436_030 Hb_060822_010--Hb_005436_030 Hb_023547_020 Hb_023547_020 Hb_060822_010--Hb_023547_020 Hb_024570_020 Hb_024570_020 Hb_060822_010--Hb_024570_020 Hb_000149_120 Hb_000149_120 Hb_060822_010--Hb_000149_120 Hb_001534_040 Hb_001534_040 Hb_060822_010--Hb_001534_040 Hb_001538_040--Hb_005436_030 Hb_001538_040--Hb_023547_020 Hb_001538_040--Hb_000149_120 Hb_001538_040--Hb_024570_020 Hb_040963_010 Hb_040963_010 Hb_001538_040--Hb_040963_010 Hb_005436_030--Hb_023547_020 Hb_064106_010 Hb_064106_010 Hb_005436_030--Hb_064106_010 Hb_003494_180 Hb_003494_180 Hb_005436_030--Hb_003494_180 Hb_006992_030 Hb_006992_030 Hb_005436_030--Hb_006992_030 Hb_023547_020--Hb_064106_010 Hb_023547_020--Hb_006992_030 Hb_005831_010 Hb_005831_010 Hb_023547_020--Hb_005831_010 Hb_024570_020--Hb_000149_120 Hb_114025_010 Hb_114025_010 Hb_024570_020--Hb_114025_010 Hb_006120_020 Hb_006120_020 Hb_024570_020--Hb_006120_020 Hb_002811_330 Hb_002811_330 Hb_024570_020--Hb_002811_330 Hb_000149_120--Hb_006120_020 Hb_000149_120--Hb_040963_010 Hb_002928_220 Hb_002928_220 Hb_000149_120--Hb_002928_220 Hb_007382_070 Hb_007382_070 Hb_000149_120--Hb_007382_070 Hb_006970_100 Hb_006970_100 Hb_000149_120--Hb_006970_100 Hb_001534_040--Hb_005436_030 Hb_089299_010 Hb_089299_010 Hb_001534_040--Hb_089299_010 Hb_142051_010 Hb_142051_010 Hb_001534_040--Hb_142051_010 Hb_006810_010 Hb_006810_010 Hb_001534_040--Hb_006810_010 Hb_002809_090 Hb_002809_090 Hb_001534_040--Hb_002809_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0495071 0.0948727 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.264833 0.19824

CAGE analysis