Hb_006810_010

Information

Type -
Description -
Location Contig6810: 301-1009
Sequence    

Annotation

kegg
ID mtr:MTR_3g014520
description NADPH:quinone oxidoreductase
nr
ID KJB74936.1
description hypothetical protein B456_012G018200 [Gossypium raimondii]
swissprot
ID P0AGE8
description Chromate reductase OS=Shigella flexneri GN=chrR PE=3 SV=1
trembl
ID A0A0D2V0C7
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G018200 PE=4 SV=1
Gene Ontology
ID GO:0005829
description nadph:quinone oxidoreductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006810_010 0.0 - - hypothetical protein B456_012G018200 [Gossypium raimondii]
2 Hb_011576_010 0.1757326934 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_001534_040 0.1860409863 - - hypothetical protein JCGZ_08436 [Jatropha curcas]
4 Hb_001949_010 0.1882982696 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
5 Hb_003095_110 0.201101954 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
6 Hb_000457_130 0.2072149465 - - hypothetical protein AALP_AA3G009100 [Arabis alpina]
7 Hb_004218_310 0.2090884462 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
8 Hb_001597_110 0.2154158213 - - -
9 Hb_142051_010 0.2155065002 - - -
10 Hb_001172_030 0.2188266784 - - PREDICTED: protein NRT1/ PTR FAMILY 7.2-like isoform X1 [Jatropha curcas]
11 Hb_074892_010 0.2189233862 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
12 Hb_000699_050 0.2209790362 - - -
13 Hb_000230_020 0.2214470533 - - cysteine synthase, putative [Ricinus communis]
14 Hb_000751_050 0.2241899051 - - PREDICTED: extensin, partial [Solanum lycopersicum]
15 Hb_005550_040 0.2271707107 - - PREDICTED: epoxide hydrolase 4-like [Jatropha curcas]
16 Hb_000061_360 0.2280487526 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
17 Hb_007130_010 0.2308274771 - - -
18 Hb_026284_010 0.2311955415 - - -
19 Hb_001571_020 0.2316977953 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
20 Hb_004310_170 0.2320127311 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]

Gene co-expression network

sample Hb_006810_010 Hb_006810_010 Hb_011576_010 Hb_011576_010 Hb_006810_010--Hb_011576_010 Hb_001534_040 Hb_001534_040 Hb_006810_010--Hb_001534_040 Hb_001949_010 Hb_001949_010 Hb_006810_010--Hb_001949_010 Hb_003095_110 Hb_003095_110 Hb_006810_010--Hb_003095_110 Hb_000457_130 Hb_000457_130 Hb_006810_010--Hb_000457_130 Hb_004218_310 Hb_004218_310 Hb_006810_010--Hb_004218_310 Hb_000230_020 Hb_000230_020 Hb_011576_010--Hb_000230_020 Hb_011576_010--Hb_001949_010 Hb_011576_010--Hb_003095_110 Hb_011576_010--Hb_000457_130 Hb_000751_070 Hb_000751_070 Hb_011576_010--Hb_000751_070 Hb_001597_110 Hb_001597_110 Hb_011576_010--Hb_001597_110 Hb_060822_010 Hb_060822_010 Hb_001534_040--Hb_060822_010 Hb_005436_030 Hb_005436_030 Hb_001534_040--Hb_005436_030 Hb_089299_010 Hb_089299_010 Hb_001534_040--Hb_089299_010 Hb_142051_010 Hb_142051_010 Hb_001534_040--Hb_142051_010 Hb_002809_090 Hb_002809_090 Hb_001534_040--Hb_002809_090 Hb_005550_040 Hb_005550_040 Hb_001949_010--Hb_005550_040 Hb_178703_010 Hb_178703_010 Hb_001949_010--Hb_178703_010 Hb_032223_020 Hb_032223_020 Hb_001949_010--Hb_032223_020 Hb_000751_050 Hb_000751_050 Hb_001949_010--Hb_000751_050 Hb_000061_360 Hb_000061_360 Hb_001949_010--Hb_000061_360 Hb_003095_110--Hb_004218_310 Hb_000567_150 Hb_000567_150 Hb_003095_110--Hb_000567_150 Hb_000087_120 Hb_000087_120 Hb_003095_110--Hb_000087_120 Hb_003095_110--Hb_000230_020 Hb_000318_400 Hb_000318_400 Hb_003095_110--Hb_000318_400 Hb_000465_180 Hb_000465_180 Hb_000457_130--Hb_000465_180 Hb_000457_130--Hb_001597_110 Hb_001300_140 Hb_001300_140 Hb_000457_130--Hb_001300_140 Hb_009812_010 Hb_009812_010 Hb_000457_130--Hb_009812_010 Hb_000844_090 Hb_000844_090 Hb_000457_130--Hb_000844_090 Hb_004218_310--Hb_011576_010 Hb_004218_310--Hb_001949_010 Hb_004218_310--Hb_000230_020 Hb_004218_310--Hb_032223_020 Hb_000645_250 Hb_000645_250 Hb_004218_310--Hb_000645_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.131726 2.11138 0.535784 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.120008 0.660054 0.1619 11.963 6.79672

CAGE analysis