Hb_000318_400

Information

Type -
Description -
Location Contig318: 389510-389734
Sequence    

Annotation

kegg
ID rcu:RCOM_0938860
description hypothetical protein
nr
ID XP_002519125.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZF6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0938860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_400 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003095_110 0.1464440124 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
3 Hb_002016_130 0.1728037892 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
4 Hb_000776_020 0.173550696 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
5 Hb_000574_030 0.1769630018 desease resistance Gene Name: Glyco_hydro_38 Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_005288_060 0.1821580924 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
7 Hb_000567_150 0.1823645585 - - cysteine protease, putative [Ricinus communis]
8 Hb_000072_110 0.1824185242 - - PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]
9 Hb_005743_030 0.183004678 - - hypothetical protein, partial [Pseudomonas fluorescens]
10 Hb_001005_040 0.1852846751 - - -
11 Hb_002379_060 0.1856926198 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
12 Hb_000087_120 0.1871608608 - - AMP dependent CoA ligase, putative [Ricinus communis]
13 Hb_004487_060 0.1873693024 - - cytochrome P450, putative [Ricinus communis]
14 Hb_001301_010 0.1882737905 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_001288_050 0.1885584181 - - -
16 Hb_009848_060 0.1898755896 - - unknown [Glycine max]
17 Hb_002529_070 0.1903949348 - - PREDICTED: putative late blight resistance protein homolog R1B-19 [Pyrus x bretschneideri]
18 Hb_068804_030 0.1906991227 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
19 Hb_002874_030 0.1928646755 - - hypothetical protein JCGZ_07001 [Jatropha curcas]
20 Hb_000416_010 0.1929974901 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]

Gene co-expression network

sample Hb_000318_400 Hb_000318_400 Hb_003095_110 Hb_003095_110 Hb_000318_400--Hb_003095_110 Hb_002016_130 Hb_002016_130 Hb_000318_400--Hb_002016_130 Hb_000776_020 Hb_000776_020 Hb_000318_400--Hb_000776_020 Hb_000574_030 Hb_000574_030 Hb_000318_400--Hb_000574_030 Hb_005288_060 Hb_005288_060 Hb_000318_400--Hb_005288_060 Hb_000567_150 Hb_000567_150 Hb_000318_400--Hb_000567_150 Hb_004218_310 Hb_004218_310 Hb_003095_110--Hb_004218_310 Hb_011576_010 Hb_011576_010 Hb_003095_110--Hb_011576_010 Hb_003095_110--Hb_000567_150 Hb_000087_120 Hb_000087_120 Hb_003095_110--Hb_000087_120 Hb_000230_020 Hb_000230_020 Hb_003095_110--Hb_000230_020 Hb_001005_040 Hb_001005_040 Hb_002016_130--Hb_001005_040 Hb_002016_130--Hb_000574_030 Hb_004487_060 Hb_004487_060 Hb_002016_130--Hb_004487_060 Hb_001288_050 Hb_001288_050 Hb_002016_130--Hb_001288_050 Hb_000416_010 Hb_000416_010 Hb_002016_130--Hb_000416_010 Hb_001301_010 Hb_001301_010 Hb_002016_130--Hb_001301_010 Hb_000776_020--Hb_001301_010 Hb_007850_110 Hb_007850_110 Hb_000776_020--Hb_007850_110 Hb_000776_020--Hb_000416_010 Hb_017098_050 Hb_017098_050 Hb_000776_020--Hb_017098_050 Hb_000442_170 Hb_000442_170 Hb_000776_020--Hb_000442_170 Hb_001109_130 Hb_001109_130 Hb_000776_020--Hb_001109_130 Hb_000574_030--Hb_001005_040 Hb_000574_030--Hb_004487_060 Hb_009848_060 Hb_009848_060 Hb_000574_030--Hb_009848_060 Hb_000574_030--Hb_001288_050 Hb_020831_070 Hb_020831_070 Hb_000574_030--Hb_020831_070 Hb_006594_080 Hb_006594_080 Hb_005288_060--Hb_006594_080 Hb_000313_230 Hb_000313_230 Hb_005288_060--Hb_000313_230 Hb_000414_180 Hb_000414_180 Hb_005288_060--Hb_000414_180 Hb_000574_250 Hb_000574_250 Hb_005288_060--Hb_000574_250 Hb_010068_050 Hb_010068_050 Hb_005288_060--Hb_010068_050 Hb_002874_030 Hb_002874_030 Hb_005288_060--Hb_002874_030 Hb_000567_150--Hb_001288_050 Hb_000751_070 Hb_000751_070 Hb_000567_150--Hb_000751_070 Hb_110737_010 Hb_110737_010 Hb_000567_150--Hb_110737_010 Hb_000567_150--Hb_001005_040 Hb_001109_170 Hb_001109_170 Hb_000567_150--Hb_001109_170 Hb_060152_010 Hb_060152_010 Hb_000567_150--Hb_060152_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30921 7.65244 34.6817 16.0256 0 0.48429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79882 6.47258 0.847111 66.9686 93.0065

CAGE analysis