Hb_002874_030

Information

Type -
Description -
Location Contig2874: 18155-21366
Sequence    

Annotation

kegg
ID rcu:RCOM_0204990
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP33430.1
description hypothetical protein JCGZ_07001 [Jatropha curcas]
swissprot
ID Q8L6Y3
description Pentatricopeptide repeat-containing protein At5g24830 OS=Arabidopsis thaliana GN=At5g24830 PE=2 SV=1
trembl
ID A0A067KMB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07001 PE=4 SV=1
Gene Ontology
ID GO:0006996
description pentatricopeptide repeat-containing protein at5g24830

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29977: 20635-20743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_030 0.0 - - hypothetical protein JCGZ_07001 [Jatropha curcas]
2 Hb_001005_040 0.1632323158 - - -
3 Hb_001109_170 0.1683639561 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
4 Hb_001288_050 0.1684353977 - - -
5 Hb_005288_060 0.1701931855 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
6 Hb_000567_150 0.1720769333 - - cysteine protease, putative [Ricinus communis]
7 Hb_002016_130 0.1775538354 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
8 Hb_110737_010 0.1838726847 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
9 Hb_025668_020 0.184018677 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002529_070 0.1871500513 - - PREDICTED: putative late blight resistance protein homolog R1B-19 [Pyrus x bretschneideri]
11 Hb_000416_010 0.1897556381 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
12 Hb_124579_020 0.1906140053 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
13 Hb_029727_010 0.1912985509 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_001301_010 0.1913071121 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_000318_400 0.1928646755 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000574_250 0.1931755965 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
17 Hb_017225_030 0.1966620607 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
18 Hb_000776_020 0.1971381138 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
19 Hb_000751_070 0.1985340216 - - -
20 Hb_000574_030 0.2016776596 desease resistance Gene Name: Glyco_hydro_38 Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_002874_030 Hb_002874_030 Hb_001005_040 Hb_001005_040 Hb_002874_030--Hb_001005_040 Hb_001109_170 Hb_001109_170 Hb_002874_030--Hb_001109_170 Hb_001288_050 Hb_001288_050 Hb_002874_030--Hb_001288_050 Hb_005288_060 Hb_005288_060 Hb_002874_030--Hb_005288_060 Hb_000567_150 Hb_000567_150 Hb_002874_030--Hb_000567_150 Hb_002016_130 Hb_002016_130 Hb_002874_030--Hb_002016_130 Hb_001005_040--Hb_002016_130 Hb_001005_040--Hb_001288_050 Hb_029727_010 Hb_029727_010 Hb_001005_040--Hb_029727_010 Hb_001005_040--Hb_000567_150 Hb_000416_010 Hb_000416_010 Hb_001005_040--Hb_000416_010 Hb_001005_040--Hb_001109_170 Hb_167211_010 Hb_167211_010 Hb_001109_170--Hb_167211_010 Hb_110737_010 Hb_110737_010 Hb_001109_170--Hb_110737_010 Hb_010311_020 Hb_010311_020 Hb_001109_170--Hb_010311_020 Hb_001109_170--Hb_000416_010 Hb_124579_020 Hb_124579_020 Hb_001109_170--Hb_124579_020 Hb_000054_130 Hb_000054_130 Hb_001109_170--Hb_000054_130 Hb_001288_050--Hb_000567_150 Hb_000751_070 Hb_000751_070 Hb_001288_050--Hb_000751_070 Hb_001597_090 Hb_001597_090 Hb_001288_050--Hb_001597_090 Hb_001571_020 Hb_001571_020 Hb_001288_050--Hb_001571_020 Hb_001288_050--Hb_002016_130 Hb_006594_080 Hb_006594_080 Hb_005288_060--Hb_006594_080 Hb_000313_230 Hb_000313_230 Hb_005288_060--Hb_000313_230 Hb_000414_180 Hb_000414_180 Hb_005288_060--Hb_000414_180 Hb_000574_250 Hb_000574_250 Hb_005288_060--Hb_000574_250 Hb_010068_050 Hb_010068_050 Hb_005288_060--Hb_010068_050 Hb_000567_150--Hb_000751_070 Hb_000567_150--Hb_110737_010 Hb_000567_150--Hb_001109_170 Hb_060152_010 Hb_060152_010 Hb_000567_150--Hb_060152_010 Hb_000574_030 Hb_000574_030 Hb_002016_130--Hb_000574_030 Hb_004487_060 Hb_004487_060 Hb_002016_130--Hb_004487_060 Hb_002016_130--Hb_000416_010 Hb_001301_010 Hb_001301_010 Hb_002016_130--Hb_001301_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0421124 0.105164 0.12143 0 0.0175684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0386072 0 0 0.340388 0.503957

CAGE analysis