Hb_001288_050

Information

Type -
Description -
Location Contig1288: 67445-67965
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001288_050 0.0 - - -
2 Hb_000567_150 0.0709396348 - - cysteine protease, putative [Ricinus communis]
3 Hb_001005_040 0.0746393024 - - -
4 Hb_000751_070 0.1001102343 - - -
5 Hb_001597_090 0.1112017689 - - -
6 Hb_001571_020 0.1141889342 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
7 Hb_002016_130 0.117201046 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
8 Hb_029727_010 0.1247481208 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_110737_010 0.1282870439 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
10 Hb_000137_060 0.1283039726 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
11 Hb_004487_060 0.133625849 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000465_180 0.1346833452 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
13 Hb_007676_060 0.136202701 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
14 Hb_001109_170 0.1391558345 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
15 Hb_146930_010 0.1457494196 - - -
16 Hb_000169_100 0.1528339134 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
17 Hb_025668_020 0.1539219687 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000574_030 0.159446593 desease resistance Gene Name: Glyco_hydro_38 Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_000416_010 0.1640817263 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
20 Hb_001301_010 0.1641270469 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001288_050 Hb_001288_050 Hb_000567_150 Hb_000567_150 Hb_001288_050--Hb_000567_150 Hb_001005_040 Hb_001005_040 Hb_001288_050--Hb_001005_040 Hb_000751_070 Hb_000751_070 Hb_001288_050--Hb_000751_070 Hb_001597_090 Hb_001597_090 Hb_001288_050--Hb_001597_090 Hb_001571_020 Hb_001571_020 Hb_001288_050--Hb_001571_020 Hb_002016_130 Hb_002016_130 Hb_001288_050--Hb_002016_130 Hb_000567_150--Hb_000751_070 Hb_110737_010 Hb_110737_010 Hb_000567_150--Hb_110737_010 Hb_000567_150--Hb_001005_040 Hb_001109_170 Hb_001109_170 Hb_000567_150--Hb_001109_170 Hb_060152_010 Hb_060152_010 Hb_000567_150--Hb_060152_010 Hb_001005_040--Hb_002016_130 Hb_029727_010 Hb_029727_010 Hb_001005_040--Hb_029727_010 Hb_000416_010 Hb_000416_010 Hb_001005_040--Hb_000416_010 Hb_001005_040--Hb_001109_170 Hb_146930_010 Hb_146930_010 Hb_000751_070--Hb_146930_010 Hb_000751_070--Hb_060152_010 Hb_000645_250 Hb_000645_250 Hb_000751_070--Hb_000645_250 Hb_000751_060 Hb_000751_060 Hb_000751_070--Hb_000751_060 Hb_007676_060 Hb_007676_060 Hb_001597_090--Hb_007676_060 Hb_001597_090--Hb_146930_010 Hb_000751_050 Hb_000751_050 Hb_001597_090--Hb_000751_050 Hb_001597_090--Hb_000751_070 Hb_001597_090--Hb_001571_020 Hb_008144_010 Hb_008144_010 Hb_001571_020--Hb_008144_010 Hb_001571_020--Hb_001005_040 Hb_000465_180 Hb_000465_180 Hb_001571_020--Hb_000465_180 Hb_009230_020 Hb_009230_020 Hb_001571_020--Hb_009230_020 Hb_000574_030 Hb_000574_030 Hb_002016_130--Hb_000574_030 Hb_004487_060 Hb_004487_060 Hb_002016_130--Hb_004487_060 Hb_002016_130--Hb_000416_010 Hb_001301_010 Hb_001301_010 Hb_002016_130--Hb_001301_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.123969 0.285888 0.303833 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.28414 1.43491

CAGE analysis