Hb_009230_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig9230: 36240-41596
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID XP_002527482.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID B9SNB3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009230_020 0.0 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
2 Hb_008144_010 0.1396735012 - - hypothetical protein VITISV_015004 [Vitis vinifera]
3 Hb_001519_240 0.1436748904 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
4 Hb_001571_020 0.1473559162 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
5 Hb_002122_050 0.1476215009 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_007676_060 0.1561926843 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
7 Hb_000137_060 0.1628097909 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
8 Hb_000675_040 0.1710575613 - - hypothetical protein OsI_02937 [Oryza sativa Indica Group]
9 Hb_145211_010 0.1716567427 - - hypothetical protein M569_05648, partial [Genlisea aurea]
10 Hb_001597_090 0.1734774609 - - -
11 Hb_012023_010 0.1751243665 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006651_010 0.1770973804 - - PREDICTED: protein disulfide isomerase-like 1-4-like [Citrus sinensis]
13 Hb_135554_010 0.1776091814 - - Insulin-degrading enzyme, putative [Ricinus communis]
14 Hb_025668_020 0.1810543796 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006096_020 0.1811687034 - - Os06g0343500 [Oryza sativa Japonica Group]
16 Hb_010490_060 0.1848645656 - - PREDICTED: uncharacterized protein LOC105767021 [Gossypium raimondii]
17 Hb_131320_010 0.1901319386 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
18 Hb_000465_180 0.1917768733 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
19 Hb_170878_060 0.1921486317 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
20 Hb_001288_050 0.1955025026 - - -

Gene co-expression network

sample Hb_009230_020 Hb_009230_020 Hb_008144_010 Hb_008144_010 Hb_009230_020--Hb_008144_010 Hb_001519_240 Hb_001519_240 Hb_009230_020--Hb_001519_240 Hb_001571_020 Hb_001571_020 Hb_009230_020--Hb_001571_020 Hb_002122_050 Hb_002122_050 Hb_009230_020--Hb_002122_050 Hb_007676_060 Hb_007676_060 Hb_009230_020--Hb_007676_060 Hb_000137_060 Hb_000137_060 Hb_009230_020--Hb_000137_060 Hb_008144_010--Hb_001571_020 Hb_072173_010 Hb_072173_010 Hb_008144_010--Hb_072173_010 Hb_131320_010 Hb_131320_010 Hb_008144_010--Hb_131320_010 Hb_110782_010 Hb_110782_010 Hb_008144_010--Hb_110782_010 Hb_009848_060 Hb_009848_060 Hb_008144_010--Hb_009848_060 Hb_135554_010 Hb_135554_010 Hb_001519_240--Hb_135554_010 Hb_007382_070 Hb_007382_070 Hb_001519_240--Hb_007382_070 Hb_000465_180 Hb_000465_180 Hb_001519_240--Hb_000465_180 Hb_033622_020 Hb_033622_020 Hb_001519_240--Hb_033622_020 Hb_006970_100 Hb_006970_100 Hb_001519_240--Hb_006970_100 Hb_006651_010 Hb_006651_010 Hb_001519_240--Hb_006651_010 Hb_001288_050 Hb_001288_050 Hb_001571_020--Hb_001288_050 Hb_001597_090 Hb_001597_090 Hb_001571_020--Hb_001597_090 Hb_001005_040 Hb_001005_040 Hb_001571_020--Hb_001005_040 Hb_001571_020--Hb_000465_180 Hb_000675_040 Hb_000675_040 Hb_002122_050--Hb_000675_040 Hb_145211_010 Hb_145211_010 Hb_002122_050--Hb_145211_010 Hb_059780_010 Hb_059780_010 Hb_002122_050--Hb_059780_010 Hb_002122_050--Hb_007676_060 Hb_002122_050--Hb_131320_010 Hb_007676_060--Hb_001597_090 Hb_170878_060 Hb_170878_060 Hb_007676_060--Hb_170878_060 Hb_146930_010 Hb_146930_010 Hb_007676_060--Hb_146930_010 Hb_007676_060--Hb_000675_040 Hb_000169_100 Hb_000169_100 Hb_007676_060--Hb_000169_100 Hb_007676_060--Hb_001288_050 Hb_000137_060--Hb_000465_180 Hb_000137_060--Hb_001288_050 Hb_000567_150 Hb_000567_150 Hb_000137_060--Hb_000567_150 Hb_000137_060--Hb_001571_020 Hb_000137_060--Hb_001005_040 Hb_007130_010 Hb_007130_010 Hb_000137_060--Hb_007130_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.245014 0.0628182 0.167713 0.0281614 0.0223512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0191142 0 1.27055 1.08217

CAGE analysis