Hb_001519_240

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1519: 272095-275685
Sequence    

Annotation

kegg
ID mdm:103428131
description disease resistance protein RGA2-like
nr
ID XP_012074608.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID M5VWQ8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016254mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001519_240 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_135554_010 0.0888857144 - - Insulin-degrading enzyme, putative [Ricinus communis]
3 Hb_007382_070 0.1242842026 - - PREDICTED: MAPK-interacting and spindle-stabilizing protein-like [Jatropha curcas]
4 Hb_000465_180 0.1248314681 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
5 Hb_033622_020 0.1256348712 - - lipid binding protein, putative [Ricinus communis]
6 Hb_006970_100 0.1305213008 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_006651_010 0.1377580718 - - PREDICTED: protein disulfide isomerase-like 1-4-like [Citrus sinensis]
8 Hb_000661_230 0.139835328 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
9 Hb_029576_080 0.1424079656 - - Aspartic proteinase precursor, putative [Ricinus communis]
10 Hb_009230_020 0.1436748904 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
11 Hb_025668_020 0.1533676473 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001571_020 0.1556218951 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
13 Hb_000137_060 0.159824828 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
14 Hb_007676_060 0.1600112067 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
15 Hb_001597_110 0.1654552201 - - -
16 Hb_000457_130 0.1665686306 - - hypothetical protein AALP_AA3G009100 [Arabis alpina]
17 Hb_010839_010 0.1684553136 - - receptor-kinase, putative [Ricinus communis]
18 Hb_001288_050 0.17156448 - - -
19 Hb_009812_010 0.1717071889 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_010812_140 0.1738630367 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001519_240 Hb_001519_240 Hb_135554_010 Hb_135554_010 Hb_001519_240--Hb_135554_010 Hb_007382_070 Hb_007382_070 Hb_001519_240--Hb_007382_070 Hb_000465_180 Hb_000465_180 Hb_001519_240--Hb_000465_180 Hb_033622_020 Hb_033622_020 Hb_001519_240--Hb_033622_020 Hb_006970_100 Hb_006970_100 Hb_001519_240--Hb_006970_100 Hb_006651_010 Hb_006651_010 Hb_001519_240--Hb_006651_010 Hb_135554_010--Hb_033622_020 Hb_029576_080 Hb_029576_080 Hb_135554_010--Hb_029576_080 Hb_135554_010--Hb_000465_180 Hb_010839_010 Hb_010839_010 Hb_135554_010--Hb_010839_010 Hb_135554_010--Hb_006970_100 Hb_007382_070--Hb_006970_100 Hb_007382_070--Hb_000465_180 Hb_007382_070--Hb_029576_080 Hb_002928_220 Hb_002928_220 Hb_007382_070--Hb_002928_220 Hb_000149_120 Hb_000149_120 Hb_007382_070--Hb_000149_120 Hb_007382_070--Hb_006651_010 Hb_000137_060 Hb_000137_060 Hb_000465_180--Hb_000137_060 Hb_000457_130 Hb_000457_130 Hb_000465_180--Hb_000457_130 Hb_001288_050 Hb_001288_050 Hb_000465_180--Hb_001288_050 Hb_001597_110 Hb_001597_110 Hb_033622_020--Hb_001597_110 Hb_000380_130 Hb_000380_130 Hb_033622_020--Hb_000380_130 Hb_074892_010 Hb_074892_010 Hb_033622_020--Hb_074892_010 Hb_033622_020--Hb_006970_100 Hb_033622_020--Hb_006651_010 Hb_006970_100--Hb_006651_010 Hb_006970_100--Hb_002928_220 Hb_003060_080 Hb_003060_080 Hb_006970_100--Hb_003060_080 Hb_006569_110 Hb_006569_110 Hb_006970_100--Hb_006569_110 Hb_006651_010--Hb_003060_080 Hb_006651_010--Hb_135554_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.112318 0.0726869 0.0874077 0 0.0140868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.549552 0.343231

CAGE analysis