Hb_002122_050

Information

Type -
Description -
Location Contig2122: 40066-40803
Sequence    

Annotation

kegg
ID mdm:103418633
description putative disease resistance protein RGA1
nr
ID XP_012078594.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q9LZ25
description Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1
trembl
ID A0A0B0NR30
description Putative disease resistance RGA4 OS=Gossypium arboreum GN=F383_17247 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002122_050 0.0 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_000675_040 0.129759595 - - hypothetical protein OsI_02937 [Oryza sativa Indica Group]
3 Hb_145211_010 0.1385854649 - - hypothetical protein M569_05648, partial [Genlisea aurea]
4 Hb_059780_010 0.1456813702 - - PREDICTED: uncharacterized protein LOC104885482, partial [Beta vulgaris subsp. vulgaris]
5 Hb_009230_020 0.1476215009 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
6 Hb_007676_060 0.1541085336 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
7 Hb_131320_010 0.1731244832 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
8 Hb_121441_010 0.1743649873 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_172939_010 0.1796417529 - - unknown [Picea sitchensis]
10 Hb_170878_060 0.1814348209 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
11 Hb_000644_040 0.1861990559 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_009157 [Vitis vinifera]
12 Hb_001519_240 0.1869279738 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_025668_020 0.1966757879 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006096_020 0.1970972763 - - Os06g0343500 [Oryza sativa Japonica Group]
15 Hb_001597_090 0.1976148604 - - -
16 Hb_001086_010 0.2022186507 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
17 Hb_008144_010 0.2038255617 - - hypothetical protein VITISV_015004 [Vitis vinifera]
18 Hb_135554_010 0.2041329926 - - Insulin-degrading enzyme, putative [Ricinus communis]
19 Hb_002566_010 0.2049769159 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
20 Hb_000982_120 0.2052967207 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]

Gene co-expression network

sample Hb_002122_050 Hb_002122_050 Hb_000675_040 Hb_000675_040 Hb_002122_050--Hb_000675_040 Hb_145211_010 Hb_145211_010 Hb_002122_050--Hb_145211_010 Hb_059780_010 Hb_059780_010 Hb_002122_050--Hb_059780_010 Hb_009230_020 Hb_009230_020 Hb_002122_050--Hb_009230_020 Hb_007676_060 Hb_007676_060 Hb_002122_050--Hb_007676_060 Hb_131320_010 Hb_131320_010 Hb_002122_050--Hb_131320_010 Hb_000675_040--Hb_145211_010 Hb_000675_040--Hb_059780_010 Hb_121441_010 Hb_121441_010 Hb_000675_040--Hb_121441_010 Hb_000675_040--Hb_131320_010 Hb_000675_040--Hb_007676_060 Hb_145211_010--Hb_059780_010 Hb_002566_010 Hb_002566_010 Hb_145211_010--Hb_002566_010 Hb_000946_030 Hb_000946_030 Hb_145211_010--Hb_000946_030 Hb_145211_010--Hb_121441_010 Hb_059780_010--Hb_121441_010 Hb_059780_010--Hb_002566_010 Hb_000982_120 Hb_000982_120 Hb_059780_010--Hb_000982_120 Hb_031931_030 Hb_031931_030 Hb_059780_010--Hb_031931_030 Hb_008144_010 Hb_008144_010 Hb_009230_020--Hb_008144_010 Hb_001519_240 Hb_001519_240 Hb_009230_020--Hb_001519_240 Hb_001571_020 Hb_001571_020 Hb_009230_020--Hb_001571_020 Hb_009230_020--Hb_007676_060 Hb_000137_060 Hb_000137_060 Hb_009230_020--Hb_000137_060 Hb_001597_090 Hb_001597_090 Hb_007676_060--Hb_001597_090 Hb_170878_060 Hb_170878_060 Hb_007676_060--Hb_170878_060 Hb_146930_010 Hb_146930_010 Hb_007676_060--Hb_146930_010 Hb_000169_100 Hb_000169_100 Hb_007676_060--Hb_000169_100 Hb_001288_050 Hb_001288_050 Hb_007676_060--Hb_001288_050 Hb_072173_010 Hb_072173_010 Hb_131320_010--Hb_072173_010 Hb_000600_080 Hb_000600_080 Hb_131320_010--Hb_000600_080 Hb_131320_010--Hb_145211_010 Hb_131320_010--Hb_008144_010 Hb_129046_010 Hb_129046_010 Hb_131320_010--Hb_129046_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.65376 0.0768664 1.81096 0.0655571 0.169359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.150443 0 0.106135 7.34685 6.00269

CAGE analysis