Hb_002016_130

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig2016: 132505-141201
Sequence    

Annotation

kegg
ID rcu:RCOM_1177870
description multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative (EC:1.3.1.74)
nr
ID XP_002523063.1
description multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
swissprot
ID Q7DM58
description ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=2 SV=2
trembl
ID B9SAP4
description Multidrug resistance-associated protein 2, 6 (Mrp2, 6), abc-transoprter, putative OS=Ricinus communis GN=RCOM_1177870 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20509: 132884-141176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_130 0.0 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
2 Hb_001005_040 0.0675117051 - - -
3 Hb_000574_030 0.0861912021 desease resistance Gene Name: Glyco_hydro_38 Disease resistance protein RPS5, putative [Ricinus communis]
4 Hb_004487_060 0.1055194992 - - cytochrome P450, putative [Ricinus communis]
5 Hb_001288_050 0.117201046 - - -
6 Hb_000416_010 0.1318137158 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
7 Hb_001301_010 0.1369753902 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_020831_070 0.1405949023 - - hypothetical protein VITISV_027174 [Vitis vinifera]
9 Hb_000567_150 0.1429827031 - - cysteine protease, putative [Ricinus communis]
10 Hb_029727_010 0.1437796568 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_009848_060 0.1460414163 - - unknown [Glycine max]
12 Hb_110737_010 0.1476636569 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
13 Hb_000260_730 0.1536230062 - - -
14 Hb_001856_280 0.1551896761 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
15 Hb_017225_030 0.1557961431 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
16 Hb_001109_170 0.1560190199 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
17 Hb_001571_020 0.1602670306 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
18 Hb_002529_070 0.1632648506 - - PREDICTED: putative late blight resistance protein homolog R1B-19 [Pyrus x bretschneideri]
19 Hb_000318_400 0.1728037892 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000776_020 0.1730117843 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]

Gene co-expression network

sample Hb_002016_130 Hb_002016_130 Hb_001005_040 Hb_001005_040 Hb_002016_130--Hb_001005_040 Hb_000574_030 Hb_000574_030 Hb_002016_130--Hb_000574_030 Hb_004487_060 Hb_004487_060 Hb_002016_130--Hb_004487_060 Hb_001288_050 Hb_001288_050 Hb_002016_130--Hb_001288_050 Hb_000416_010 Hb_000416_010 Hb_002016_130--Hb_000416_010 Hb_001301_010 Hb_001301_010 Hb_002016_130--Hb_001301_010 Hb_001005_040--Hb_001288_050 Hb_029727_010 Hb_029727_010 Hb_001005_040--Hb_029727_010 Hb_000567_150 Hb_000567_150 Hb_001005_040--Hb_000567_150 Hb_001005_040--Hb_000416_010 Hb_001109_170 Hb_001109_170 Hb_001005_040--Hb_001109_170 Hb_000574_030--Hb_001005_040 Hb_000574_030--Hb_004487_060 Hb_009848_060 Hb_009848_060 Hb_000574_030--Hb_009848_060 Hb_000574_030--Hb_001288_050 Hb_020831_070 Hb_020831_070 Hb_000574_030--Hb_020831_070 Hb_110737_010 Hb_110737_010 Hb_004487_060--Hb_110737_010 Hb_004487_060--Hb_001288_050 Hb_004487_060--Hb_001005_040 Hb_004487_060--Hb_000567_150 Hb_001288_050--Hb_000567_150 Hb_000751_070 Hb_000751_070 Hb_001288_050--Hb_000751_070 Hb_001597_090 Hb_001597_090 Hb_001288_050--Hb_001597_090 Hb_001571_020 Hb_001571_020 Hb_001288_050--Hb_001571_020 Hb_010311_020 Hb_010311_020 Hb_000416_010--Hb_010311_020 Hb_124579_020 Hb_124579_020 Hb_000416_010--Hb_124579_020 Hb_185474_020 Hb_185474_020 Hb_000416_010--Hb_185474_020 Hb_000416_010--Hb_001301_010 Hb_000416_010--Hb_001109_170 Hb_000776_020 Hb_000776_020 Hb_000416_010--Hb_000776_020 Hb_001301_010--Hb_000776_020 Hb_002845_020 Hb_002845_020 Hb_001301_010--Hb_002845_020 Hb_000442_170 Hb_000442_170 Hb_001301_010--Hb_000442_170 Hb_001866_100 Hb_001866_100 Hb_001301_010--Hb_001866_100 Hb_007205_020 Hb_007205_020 Hb_001301_010--Hb_007205_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.79796 19.6629 10.1789 0.0268674 0.00309582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1246 0.0367727 0.0826706 51.7808 96.7922

CAGE analysis