Hb_167211_010

Information

Type -
Description -
Location Contig167211: 26139-32563
Sequence    

Annotation

kegg
ID rcu:RCOM_0487060
description glutamate receptor 3 plant, putative
nr
ID XP_012086332.1
description PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
swissprot
ID Q8GXJ4
description Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2
trembl
ID B9SDW0
description Glutamate receptor OS=Ricinus communis GN=RCOM_0487060 PE=3 SV=1
Gene Ontology
ID GO:0016020
description glutamate receptor -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_167211_010 0.0 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
2 Hb_000054_130 0.0783442071 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
3 Hb_001778_040 0.0883978942 - - hypothetical protein VITISV_021035 [Vitis vinifera]
4 Hb_001109_170 0.0932233055 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
5 Hb_001622_020 0.0953744656 - - -
6 Hb_124579_020 0.0988543058 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
7 Hb_005332_050 0.0991790214 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
8 Hb_003992_220 0.1051358321 - - s-receptor kinase, putative [Ricinus communis]
9 Hb_010311_020 0.1066928378 - - lrr receptor protein kinase, putative [Ricinus communis]
10 Hb_001629_050 0.1085819722 - - structural constituent of cell wall, putative [Ricinus communis]
11 Hb_004607_160 0.1141436409 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
12 Hb_000237_120 0.1152979213 - - PREDICTED: beta-galactosidase 3-like [Jatropha curcas]
13 Hb_003142_080 0.1164976364 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_000130_480 0.1167757511 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
15 Hb_002635_010 0.1171298588 - - homogentisate phytyl transferase [Hevea brasiliensis]
16 Hb_006198_040 0.1182936266 - - conserved hypothetical protein [Ricinus communis]
17 Hb_181463_020 0.1197940652 - - hypothetical protein JCGZ_26765 [Jatropha curcas]
18 Hb_007850_110 0.1229180446 - - MADS-box transcription factor 3 [Hevea brasiliensis]
19 Hb_000836_030 0.1301978003 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
20 Hb_006594_080 0.1318500877 - - beta-glucosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_167211_010 Hb_167211_010 Hb_000054_130 Hb_000054_130 Hb_167211_010--Hb_000054_130 Hb_001778_040 Hb_001778_040 Hb_167211_010--Hb_001778_040 Hb_001109_170 Hb_001109_170 Hb_167211_010--Hb_001109_170 Hb_001622_020 Hb_001622_020 Hb_167211_010--Hb_001622_020 Hb_124579_020 Hb_124579_020 Hb_167211_010--Hb_124579_020 Hb_005332_050 Hb_005332_050 Hb_167211_010--Hb_005332_050 Hb_000054_130--Hb_001622_020 Hb_000054_130--Hb_001778_040 Hb_181463_020 Hb_181463_020 Hb_000054_130--Hb_181463_020 Hb_000054_130--Hb_001109_170 Hb_000237_120 Hb_000237_120 Hb_000054_130--Hb_000237_120 Hb_001778_040--Hb_001622_020 Hb_000254_060 Hb_000254_060 Hb_001778_040--Hb_000254_060 Hb_003992_220 Hb_003992_220 Hb_001778_040--Hb_003992_220 Hb_001629_050 Hb_001629_050 Hb_001778_040--Hb_001629_050 Hb_110737_010 Hb_110737_010 Hb_001109_170--Hb_110737_010 Hb_010311_020 Hb_010311_020 Hb_001109_170--Hb_010311_020 Hb_000416_010 Hb_000416_010 Hb_001109_170--Hb_000416_010 Hb_001109_170--Hb_124579_020 Hb_001622_020--Hb_000254_060 Hb_060152_010 Hb_060152_010 Hb_001622_020--Hb_060152_010 Hb_168319_060 Hb_168319_060 Hb_001622_020--Hb_168319_060 Hb_124579_020--Hb_010311_020 Hb_000130_480 Hb_000130_480 Hb_124579_020--Hb_000130_480 Hb_124579_020--Hb_000416_010 Hb_185474_020 Hb_185474_020 Hb_124579_020--Hb_185474_020 Hb_003142_080 Hb_003142_080 Hb_124579_020--Hb_003142_080 Hb_002635_010 Hb_002635_010 Hb_124579_020--Hb_002635_010 Hb_004607_160 Hb_004607_160 Hb_005332_050--Hb_004607_160 Hb_005332_050--Hb_000130_480 Hb_007850_110 Hb_007850_110 Hb_005332_050--Hb_007850_110 Hb_000836_030 Hb_000836_030 Hb_005332_050--Hb_000836_030 Hb_005332_050--Hb_001778_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00591801 1.00849 1.60376 3.54466 0 0.00516803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0268315 0 0 3.50335 6.49567

CAGE analysis