Hb_000230_020

Information

Type -
Description -
Location Contig230: 29093-30827
Sequence    

Annotation

kegg
ID mtr:MTR_1g081610
description Cysteine synthase
nr
ID XP_002512255.1
description cysteine synthase, putative [Ricinus communis]
swissprot
ID Q9XEA8
description Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1
trembl
ID A0A0D2PI03
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G245500 PE=4 SV=1
Gene Ontology
ID GO:0016740
description cysteine synthase-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_020 0.0 - - cysteine synthase, putative [Ricinus communis]
2 Hb_011576_010 0.09642726 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_001949_010 0.1316399071 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
4 Hb_026419_010 0.1342765693 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
5 Hb_079394_010 0.1405977408 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
6 Hb_003095_110 0.1418522608 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
7 Hb_000087_120 0.1534866072 - - AMP dependent CoA ligase, putative [Ricinus communis]
8 Hb_004218_310 0.1648912523 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
9 Hb_004709_030 0.1673066498 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
10 Hb_006789_020 0.1691703356 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase-like 22 [Camelina sativa]
11 Hb_004487_060 0.1729077504 - - cytochrome P450, putative [Ricinus communis]
12 Hb_002379_060 0.1759839366 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
13 Hb_000567_150 0.1795313849 - - cysteine protease, putative [Ricinus communis]
14 Hb_032223_020 0.1798451311 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000226_110 0.1822787388 - - -
16 Hb_068804_030 0.1826932909 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
17 Hb_000751_070 0.1835043215 - - -
18 Hb_008376_020 0.1856216851 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
19 Hb_001004_130 0.1859756806 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
20 Hb_110737_010 0.1888675001 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000230_020 Hb_000230_020 Hb_011576_010 Hb_011576_010 Hb_000230_020--Hb_011576_010 Hb_001949_010 Hb_001949_010 Hb_000230_020--Hb_001949_010 Hb_026419_010 Hb_026419_010 Hb_000230_020--Hb_026419_010 Hb_079394_010 Hb_079394_010 Hb_000230_020--Hb_079394_010 Hb_003095_110 Hb_003095_110 Hb_000230_020--Hb_003095_110 Hb_000087_120 Hb_000087_120 Hb_000230_020--Hb_000087_120 Hb_011576_010--Hb_001949_010 Hb_011576_010--Hb_003095_110 Hb_000457_130 Hb_000457_130 Hb_011576_010--Hb_000457_130 Hb_000751_070 Hb_000751_070 Hb_011576_010--Hb_000751_070 Hb_001597_110 Hb_001597_110 Hb_011576_010--Hb_001597_110 Hb_005550_040 Hb_005550_040 Hb_001949_010--Hb_005550_040 Hb_178703_010 Hb_178703_010 Hb_001949_010--Hb_178703_010 Hb_032223_020 Hb_032223_020 Hb_001949_010--Hb_032223_020 Hb_000751_050 Hb_000751_050 Hb_001949_010--Hb_000751_050 Hb_000061_360 Hb_000061_360 Hb_001949_010--Hb_000061_360 Hb_000226_110 Hb_000226_110 Hb_026419_010--Hb_000226_110 Hb_004709_030 Hb_004709_030 Hb_026419_010--Hb_004709_030 Hb_019278_010 Hb_019278_010 Hb_026419_010--Hb_019278_010 Hb_026419_010--Hb_000087_120 Hb_000365_440 Hb_000365_440 Hb_026419_010--Hb_000365_440 Hb_001004_130 Hb_001004_130 Hb_079394_010--Hb_001004_130 Hb_005333_210 Hb_005333_210 Hb_079394_010--Hb_005333_210 Hb_008376_020 Hb_008376_020 Hb_079394_010--Hb_008376_020 Hb_004519_010 Hb_004519_010 Hb_079394_010--Hb_004519_010 Hb_000832_250 Hb_000832_250 Hb_079394_010--Hb_000832_250 Hb_079394_010--Hb_004709_030 Hb_004218_310 Hb_004218_310 Hb_003095_110--Hb_004218_310 Hb_000567_150 Hb_000567_150 Hb_003095_110--Hb_000567_150 Hb_003095_110--Hb_000087_120 Hb_000318_400 Hb_000318_400 Hb_003095_110--Hb_000318_400 Hb_002379_060 Hb_002379_060 Hb_000087_120--Hb_002379_060 Hb_000087_120--Hb_019278_010 Hb_170023_010 Hb_170023_010 Hb_000087_120--Hb_170023_010 Hb_000087_120--Hb_004709_030 Hb_004324_320 Hb_004324_320 Hb_000087_120--Hb_004324_320 Hb_000215_130 Hb_000215_130 Hb_000087_120--Hb_000215_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0375186 0.0134334 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0827867 0.0613818

CAGE analysis