Hb_026419_010

Information

Type -
Description -
Location Contig26419: 7363-9650
Sequence    

Annotation

kegg
ID rcu:RCOM_1039070
description cyclin d, putative
nr
ID XP_012067966.1
description PREDICTED: cyclin-D3-1-like [Jatropha curcas]
swissprot
ID Q69QB8
description Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYCD3-1 PE=2 SV=2
trembl
ID A0A067KZ51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15864 PE=3 SV=1
Gene Ontology
ID GO:0005634
description d2 4-type cyclin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026419_010 0.0 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
2 Hb_000226_110 0.0976981298 - - -
3 Hb_004709_030 0.109316897 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
4 Hb_019278_010 0.116544871 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
5 Hb_000087_120 0.1303530661 - - AMP dependent CoA ligase, putative [Ricinus communis]
6 Hb_000365_440 0.1335531416 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
7 Hb_000230_020 0.1342765693 - - cysteine synthase, putative [Ricinus communis]
8 Hb_006789_020 0.1366362082 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase-like 22 [Camelina sativa]
9 Hb_079394_010 0.1440871771 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
10 Hb_002151_150 0.1517001393 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
11 Hb_170023_010 0.1587987311 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
12 Hb_116190_010 0.163027405 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
13 Hb_002701_170 0.1641619608 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
14 Hb_006499_020 0.1649133276 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
15 Hb_119443_010 0.165993106 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
16 Hb_000337_030 0.1670601663 - - amino acid transporter, putative [Ricinus communis]
17 Hb_002379_060 0.1672981117 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
18 Hb_068804_030 0.167790687 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
19 Hb_006916_130 0.1715244307 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
20 Hb_003095_110 0.172117574 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]

Gene co-expression network

sample Hb_026419_010 Hb_026419_010 Hb_000226_110 Hb_000226_110 Hb_026419_010--Hb_000226_110 Hb_004709_030 Hb_004709_030 Hb_026419_010--Hb_004709_030 Hb_019278_010 Hb_019278_010 Hb_026419_010--Hb_019278_010 Hb_000087_120 Hb_000087_120 Hb_026419_010--Hb_000087_120 Hb_000365_440 Hb_000365_440 Hb_026419_010--Hb_000365_440 Hb_000230_020 Hb_000230_020 Hb_026419_010--Hb_000230_020 Hb_006499_020 Hb_006499_020 Hb_000226_110--Hb_006499_020 Hb_116190_010 Hb_116190_010 Hb_000226_110--Hb_116190_010 Hb_001369_270 Hb_001369_270 Hb_000226_110--Hb_001369_270 Hb_003861_090 Hb_003861_090 Hb_000226_110--Hb_003861_090 Hb_000373_060 Hb_000373_060 Hb_000226_110--Hb_000373_060 Hb_004709_030--Hb_000365_440 Hb_004709_030--Hb_019278_010 Hb_004709_030--Hb_000087_120 Hb_001186_120 Hb_001186_120 Hb_004709_030--Hb_001186_120 Hb_170023_010 Hb_170023_010 Hb_004709_030--Hb_170023_010 Hb_019278_010--Hb_170023_010 Hb_019278_010--Hb_000087_120 Hb_000337_030 Hb_000337_030 Hb_019278_010--Hb_000337_030 Hb_019278_010--Hb_000365_440 Hb_002379_060 Hb_002379_060 Hb_019278_010--Hb_002379_060 Hb_000087_120--Hb_002379_060 Hb_000087_120--Hb_170023_010 Hb_004324_320 Hb_004324_320 Hb_000087_120--Hb_004324_320 Hb_000215_130 Hb_000215_130 Hb_000087_120--Hb_000215_130 Hb_000880_040 Hb_000880_040 Hb_000365_440--Hb_000880_040 Hb_001244_070 Hb_001244_070 Hb_000365_440--Hb_001244_070 Hb_000365_440--Hb_170023_010 Hb_005050_030 Hb_005050_030 Hb_000365_440--Hb_005050_030 Hb_011576_010 Hb_011576_010 Hb_000230_020--Hb_011576_010 Hb_001949_010 Hb_001949_010 Hb_000230_020--Hb_001949_010 Hb_079394_010 Hb_079394_010 Hb_000230_020--Hb_079394_010 Hb_003095_110 Hb_003095_110 Hb_000230_020--Hb_003095_110 Hb_000230_020--Hb_000087_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.194512 0.116997 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.256531 0.231319

CAGE analysis