Hb_003095_110

Information

Type -
Description -
Location Contig3095: 63640-64758
Sequence    

Annotation

kegg
ID rcu:RCOM_0938850
description GTP-binding protein alpha subunit, gna, putative
nr
ID XP_002519124.1
description GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
swissprot
ID O80462
description Extra-large guanine nucleotide-binding protein 1 OS=Arabidopsis thaliana GN=XLG1 PE=1 SV=2
trembl
ID B9RZF5
description GTP-binding protein alpha subunit, gna, putative OS=Ricinus communis GN=RCOM_0938850 PE=4 SV=1
Gene Ontology
ID GO:0003924
description extra-large guanine nucleotide-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003095_110 0.0 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
2 Hb_004218_310 0.1256807876 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
3 Hb_011576_010 0.1339127197 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_000567_150 0.139799205 - - cysteine protease, putative [Ricinus communis]
5 Hb_000087_120 0.1399565341 - - AMP dependent CoA ligase, putative [Ricinus communis]
6 Hb_000230_020 0.1418522608 - - cysteine synthase, putative [Ricinus communis]
7 Hb_000318_400 0.1464440124 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000751_070 0.1508791312 - - -
9 Hb_110737_010 0.1547397518 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
10 Hb_002379_060 0.1590591711 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
11 Hb_068804_030 0.1620794736 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
12 Hb_001288_050 0.1652861235 - - -
13 Hb_004487_060 0.1686550514 - - cytochrome P450, putative [Ricinus communis]
14 Hb_026419_010 0.172117574 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
15 Hb_000645_250 0.1778631711 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
16 Hb_000847_120 0.1783824794 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
17 Hb_060152_010 0.1785405342 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
18 Hb_019278_010 0.1790211962 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
19 Hb_000226_110 0.1848747473 - - -
20 Hb_000457_130 0.1855304481 - - hypothetical protein AALP_AA3G009100 [Arabis alpina]

Gene co-expression network

sample Hb_003095_110 Hb_003095_110 Hb_004218_310 Hb_004218_310 Hb_003095_110--Hb_004218_310 Hb_011576_010 Hb_011576_010 Hb_003095_110--Hb_011576_010 Hb_000567_150 Hb_000567_150 Hb_003095_110--Hb_000567_150 Hb_000087_120 Hb_000087_120 Hb_003095_110--Hb_000087_120 Hb_000230_020 Hb_000230_020 Hb_003095_110--Hb_000230_020 Hb_000318_400 Hb_000318_400 Hb_003095_110--Hb_000318_400 Hb_004218_310--Hb_011576_010 Hb_001949_010 Hb_001949_010 Hb_004218_310--Hb_001949_010 Hb_004218_310--Hb_000230_020 Hb_032223_020 Hb_032223_020 Hb_004218_310--Hb_032223_020 Hb_000645_250 Hb_000645_250 Hb_004218_310--Hb_000645_250 Hb_011576_010--Hb_000230_020 Hb_011576_010--Hb_001949_010 Hb_000457_130 Hb_000457_130 Hb_011576_010--Hb_000457_130 Hb_000751_070 Hb_000751_070 Hb_011576_010--Hb_000751_070 Hb_001597_110 Hb_001597_110 Hb_011576_010--Hb_001597_110 Hb_001288_050 Hb_001288_050 Hb_000567_150--Hb_001288_050 Hb_000567_150--Hb_000751_070 Hb_110737_010 Hb_110737_010 Hb_000567_150--Hb_110737_010 Hb_001005_040 Hb_001005_040 Hb_000567_150--Hb_001005_040 Hb_001109_170 Hb_001109_170 Hb_000567_150--Hb_001109_170 Hb_060152_010 Hb_060152_010 Hb_000567_150--Hb_060152_010 Hb_002379_060 Hb_002379_060 Hb_000087_120--Hb_002379_060 Hb_019278_010 Hb_019278_010 Hb_000087_120--Hb_019278_010 Hb_170023_010 Hb_170023_010 Hb_000087_120--Hb_170023_010 Hb_004709_030 Hb_004709_030 Hb_000087_120--Hb_004709_030 Hb_004324_320 Hb_004324_320 Hb_000087_120--Hb_004324_320 Hb_000215_130 Hb_000215_130 Hb_000087_120--Hb_000215_130 Hb_000230_020--Hb_001949_010 Hb_026419_010 Hb_026419_010 Hb_000230_020--Hb_026419_010 Hb_079394_010 Hb_079394_010 Hb_000230_020--Hb_079394_010 Hb_000230_020--Hb_000087_120 Hb_002016_130 Hb_002016_130 Hb_000318_400--Hb_002016_130 Hb_000776_020 Hb_000776_020 Hb_000318_400--Hb_000776_020 Hb_000574_030 Hb_000574_030 Hb_000318_400--Hb_000574_030 Hb_005288_060 Hb_005288_060 Hb_000318_400--Hb_005288_060 Hb_000318_400--Hb_000567_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0231611 0.367211 0.22023 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0499991 0 0.868911 0.806448

CAGE analysis