Hb_001534_040

Information

Type -
Description -
Location Contig1534: 36729-40596
Sequence    

Annotation

kegg
ID fve:101299576
description thaumatin-like protein 1-like
nr
ID KDP36620.1
description hypothetical protein JCGZ_08436 [Jatropha curcas]
swissprot
ID P83332
description Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1
trembl
ID A0A067KWH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08436 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13184: 37106-38342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001534_040 0.0 - - hypothetical protein JCGZ_08436 [Jatropha curcas]
2 Hb_060822_010 0.1750995117 - - -
3 Hb_005436_030 0.1807986053 - - PREDICTED: UDP-glycosyltransferase 74E1-like [Jatropha curcas]
4 Hb_089299_010 0.1835229569 - - conserved hypothetical protein [Ricinus communis]
5 Hb_142051_010 0.184145193 - - -
6 Hb_006810_010 0.1860409863 - - hypothetical protein B456_012G018200 [Gossypium raimondii]
7 Hb_002809_090 0.1948656424 - - -
8 Hb_000574_030 0.1965540309 desease resistance Gene Name: Glyco_hydro_38 Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_029510_080 0.2023022152 - - -
10 Hb_000318_400 0.2027407246 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003057_030 0.2042587354 - - hypothetical protein JCGZ_06668 [Jatropha curcas]
12 Hb_000906_120 0.2051745544 - - hypothetical protein VITISV_006406 [Vitis vinifera]
13 Hb_004487_060 0.205762233 - - cytochrome P450, putative [Ricinus communis]
14 Hb_006415_010 0.2065915027 - - -
15 Hb_001571_020 0.2076501329 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
16 Hb_005743_030 0.2083919887 - - hypothetical protein, partial [Pseudomonas fluorescens]
17 Hb_023547_020 0.208756515 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001210_100 0.2090551716 - - Gibberellin 20 oxidase, putative [Ricinus communis]
19 Hb_003095_110 0.2103468059 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
20 Hb_161728_010 0.2138399736 - - hypothetical protein JCGZ_11176 [Jatropha curcas]

Gene co-expression network

sample Hb_001534_040 Hb_001534_040 Hb_060822_010 Hb_060822_010 Hb_001534_040--Hb_060822_010 Hb_005436_030 Hb_005436_030 Hb_001534_040--Hb_005436_030 Hb_089299_010 Hb_089299_010 Hb_001534_040--Hb_089299_010 Hb_142051_010 Hb_142051_010 Hb_001534_040--Hb_142051_010 Hb_006810_010 Hb_006810_010 Hb_001534_040--Hb_006810_010 Hb_002809_090 Hb_002809_090 Hb_001534_040--Hb_002809_090 Hb_001538_040 Hb_001538_040 Hb_060822_010--Hb_001538_040 Hb_060822_010--Hb_005436_030 Hb_023547_020 Hb_023547_020 Hb_060822_010--Hb_023547_020 Hb_024570_020 Hb_024570_020 Hb_060822_010--Hb_024570_020 Hb_000149_120 Hb_000149_120 Hb_060822_010--Hb_000149_120 Hb_005436_030--Hb_023547_020 Hb_005436_030--Hb_001538_040 Hb_064106_010 Hb_064106_010 Hb_005436_030--Hb_064106_010 Hb_003494_180 Hb_003494_180 Hb_005436_030--Hb_003494_180 Hb_006992_030 Hb_006992_030 Hb_005436_030--Hb_006992_030 Hb_000906_120 Hb_000906_120 Hb_089299_010--Hb_000906_120 Hb_006415_010 Hb_006415_010 Hb_089299_010--Hb_006415_010 Hb_089299_010--Hb_142051_010 Hb_002188_050 Hb_002188_050 Hb_089299_010--Hb_002188_050 Hb_089299_010--Hb_002809_090 Hb_029510_080 Hb_029510_080 Hb_089299_010--Hb_029510_080 Hb_142051_010--Hb_002809_090 Hb_142051_010--Hb_029510_080 Hb_003057_030 Hb_003057_030 Hb_142051_010--Hb_003057_030 Hb_161728_010 Hb_161728_010 Hb_142051_010--Hb_161728_010 Hb_142051_010--Hb_000906_120 Hb_011576_010 Hb_011576_010 Hb_006810_010--Hb_011576_010 Hb_001949_010 Hb_001949_010 Hb_006810_010--Hb_001949_010 Hb_003095_110 Hb_003095_110 Hb_006810_010--Hb_003095_110 Hb_000457_130 Hb_000457_130 Hb_006810_010--Hb_000457_130 Hb_004218_310 Hb_004218_310 Hb_006810_010--Hb_004218_310 Hb_002809_090--Hb_029510_080 Hb_002809_090--Hb_003057_030 Hb_002809_090--Hb_161728_010 Hb_177772_010 Hb_177772_010 Hb_002809_090--Hb_177772_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0723618 0.323703 0.00968482 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0711411 0 0.946163 0.993464

CAGE analysis