Hb_024570_020

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig24570: 24418-26332
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25060g
description POPTRDRAFT_561710; hypothetical protein
nr
ID XP_011019548.1
description PREDICTED: transcription factor RAX2-like [Populus euphratica]
swissprot
ID Q9SJL7
description Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1
trembl
ID B9HE03
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25060g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25593: 24492-25795
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024570_020 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
2 Hb_000149_120 0.1322449967 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
3 Hb_060822_010 0.1506676867 - - -
4 Hb_001538_040 0.1508935752 - - PREDICTED: uncharacterized protein LOC104228304 [Nicotiana sylvestris]
5 Hb_114025_010 0.1713476192 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
6 Hb_006120_020 0.1762313055 - - -
7 Hb_002811_330 0.1824772787 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
8 Hb_001369_320 0.1844444432 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
9 Hb_040963_010 0.1891962559 - - PREDICTED: polyneuridine-aldehyde esterase-like [Populus euphratica]
10 Hb_002928_220 0.1892195428 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
11 Hb_005614_030 0.1904177925 - - PREDICTED: transcription factor SCREAM2-like isoform X1 [Jatropha curcas]
12 Hb_009486_100 0.1937903152 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_008080_050 0.1960536717 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_002435_080 0.1978934508 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000291_320 0.1979147152 - - Protein MLO, putative [Ricinus communis]
16 Hb_009812_010 0.1979179119 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_000705_060 0.1993838154 - - hypothetical protein TRIUR3_06087 [Triticum urartu]
18 Hb_000844_090 0.2012907143 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
19 Hb_005436_030 0.2070974338 - - PREDICTED: UDP-glycosyltransferase 74E1-like [Jatropha curcas]
20 Hb_001454_300 0.2079831628 - - nucleotide binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_024570_020 Hb_024570_020 Hb_000149_120 Hb_000149_120 Hb_024570_020--Hb_000149_120 Hb_060822_010 Hb_060822_010 Hb_024570_020--Hb_060822_010 Hb_001538_040 Hb_001538_040 Hb_024570_020--Hb_001538_040 Hb_114025_010 Hb_114025_010 Hb_024570_020--Hb_114025_010 Hb_006120_020 Hb_006120_020 Hb_024570_020--Hb_006120_020 Hb_002811_330 Hb_002811_330 Hb_024570_020--Hb_002811_330 Hb_000149_120--Hb_006120_020 Hb_040963_010 Hb_040963_010 Hb_000149_120--Hb_040963_010 Hb_002928_220 Hb_002928_220 Hb_000149_120--Hb_002928_220 Hb_007382_070 Hb_007382_070 Hb_000149_120--Hb_007382_070 Hb_006970_100 Hb_006970_100 Hb_000149_120--Hb_006970_100 Hb_060822_010--Hb_001538_040 Hb_005436_030 Hb_005436_030 Hb_060822_010--Hb_005436_030 Hb_023547_020 Hb_023547_020 Hb_060822_010--Hb_023547_020 Hb_060822_010--Hb_000149_120 Hb_001534_040 Hb_001534_040 Hb_060822_010--Hb_001534_040 Hb_001538_040--Hb_005436_030 Hb_001538_040--Hb_023547_020 Hb_001538_040--Hb_000149_120 Hb_001538_040--Hb_040963_010 Hb_008080_050 Hb_008080_050 Hb_114025_010--Hb_008080_050 Hb_001856_060 Hb_001856_060 Hb_114025_010--Hb_001856_060 Hb_001675_230 Hb_001675_230 Hb_114025_010--Hb_001675_230 Hb_114025_010--Hb_006120_020 Hb_002435_080 Hb_002435_080 Hb_114025_010--Hb_002435_080 Hb_000291_320 Hb_000291_320 Hb_114025_010--Hb_000291_320 Hb_006120_020--Hb_001675_230 Hb_006120_020--Hb_002928_220 Hb_005618_110 Hb_005618_110 Hb_006120_020--Hb_005618_110 Hb_006120_020--Hb_006970_100 Hb_002960_010 Hb_002960_010 Hb_002811_330--Hb_002960_010 Hb_136546_010 Hb_136546_010 Hb_002811_330--Hb_136546_010 Hb_004079_110 Hb_004079_110 Hb_002811_330--Hb_004079_110 Hb_007676_040 Hb_007676_040 Hb_002811_330--Hb_007676_040 Hb_000521_360 Hb_000521_360 Hb_002811_330--Hb_000521_360 Hb_002811_330--Hb_002435_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0444174 0.0926437 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.280666 0.0886024

CAGE analysis