Hb_001675_230

Information

Type -
Description -
Location Contig1675: 160543-163611
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11720g
description scab resistance family protein
nr
ID XP_002315907.2
description scab resistance family protein [Populus trichocarpa]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID B9HWB2
description Scab resistance family protein OS=Populus trichocarpa GN=POPTR_0010s11720g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_230 0.0 - - scab resistance family protein [Populus trichocarpa]
2 Hb_008080_050 0.1000267458 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_114025_010 0.1107228552 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
4 Hb_006120_020 0.1307299832 - - -
5 Hb_011282_070 0.1499824829 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000422_020 0.1516587963 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
7 Hb_000575_110 0.1524392731 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
8 Hb_000666_020 0.1535860508 - - Major latex protein, putative [Ricinus communis]
9 Hb_001856_060 0.1560033162 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_002928_220 0.1587754296 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
11 Hb_006970_100 0.1627938185 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_137695_010 0.1650731181 - - PREDICTED: wall-associated receptor kinase 2-like [Malus domestica]
13 Hb_006569_110 0.1667992755 - - conserved hypothetical protein [Ricinus communis]
14 Hb_021419_060 0.1671498797 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
15 Hb_110218_010 0.1673703583 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
16 Hb_000149_120 0.1677788829 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
17 Hb_006651_010 0.1685121243 - - PREDICTED: protein disulfide isomerase-like 1-4-like [Citrus sinensis]
18 Hb_000177_120 0.1688147218 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
19 Hb_007894_260 0.169531404 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_009012_020 0.1698907948 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]

Gene co-expression network

sample Hb_001675_230 Hb_001675_230 Hb_008080_050 Hb_008080_050 Hb_001675_230--Hb_008080_050 Hb_114025_010 Hb_114025_010 Hb_001675_230--Hb_114025_010 Hb_006120_020 Hb_006120_020 Hb_001675_230--Hb_006120_020 Hb_011282_070 Hb_011282_070 Hb_001675_230--Hb_011282_070 Hb_000422_020 Hb_000422_020 Hb_001675_230--Hb_000422_020 Hb_000575_110 Hb_000575_110 Hb_001675_230--Hb_000575_110 Hb_008080_050--Hb_114025_010 Hb_001856_060 Hb_001856_060 Hb_008080_050--Hb_001856_060 Hb_000411_060 Hb_000411_060 Hb_008080_050--Hb_000411_060 Hb_002542_090 Hb_002542_090 Hb_008080_050--Hb_002542_090 Hb_001013_040 Hb_001013_040 Hb_008080_050--Hb_001013_040 Hb_114025_010--Hb_001856_060 Hb_114025_010--Hb_006120_020 Hb_002435_080 Hb_002435_080 Hb_114025_010--Hb_002435_080 Hb_000291_320 Hb_000291_320 Hb_114025_010--Hb_000291_320 Hb_000149_120 Hb_000149_120 Hb_006120_020--Hb_000149_120 Hb_002928_220 Hb_002928_220 Hb_006120_020--Hb_002928_220 Hb_005618_110 Hb_005618_110 Hb_006120_020--Hb_005618_110 Hb_006970_100 Hb_006970_100 Hb_006120_020--Hb_006970_100 Hb_021419_060 Hb_021419_060 Hb_011282_070--Hb_021419_060 Hb_004463_040 Hb_004463_040 Hb_011282_070--Hb_004463_040 Hb_002048_010 Hb_002048_010 Hb_011282_070--Hb_002048_010 Hb_020332_040 Hb_020332_040 Hb_011282_070--Hb_020332_040 Hb_011282_070--Hb_000422_020 Hb_000683_010 Hb_000683_010 Hb_011282_070--Hb_000683_010 Hb_000422_020--Hb_000575_110 Hb_000422_020--Hb_000683_010 Hb_008768_010 Hb_008768_010 Hb_000422_020--Hb_008768_010 Hb_003900_050 Hb_003900_050 Hb_000422_020--Hb_003900_050 Hb_056101_010 Hb_056101_010 Hb_000422_020--Hb_056101_010 Hb_025526_010 Hb_025526_010 Hb_000422_020--Hb_025526_010 Hb_009486_100 Hb_009486_100 Hb_000575_110--Hb_009486_100 Hb_000575_110--Hb_056101_010 Hb_000575_110--Hb_025526_010 Hb_000575_110--Hb_002048_010 Hb_000575_110--Hb_003900_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.120375 0.0335907 0.00465233 0.00584741 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.574789 0.118986

CAGE analysis