Hb_005614_030

Information

Type -
Description -
Location Contig5614: 38572-40006
Sequence    

Annotation

kegg
ID vvi:100241403
description uncharacterized LOC100241403
nr
ID XP_012089715.1
description PREDICTED: transcription factor SCREAM2-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LXA9
description Transcription factor bHLH61 OS=Arabidopsis thaliana GN=BHLH61 PE=2 SV=1
trembl
ID A0A067JS26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00382 PE=4 SV=1
Gene Ontology
ID GO:0016597
description transcription factor scream2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48801: 38566-39915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005614_030 0.0 - - PREDICTED: transcription factor SCREAM2-like isoform X1 [Jatropha curcas]
2 Hb_005168_030 0.1327421356 - - unknown [Zea mays]
3 Hb_011440_010 0.1350456787 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
4 Hb_123560_020 0.1386965106 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
5 Hb_001366_050 0.1389211871 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2 [Populus euphratica]
6 Hb_007676_040 0.1468468713 - - cellulose synthase, putative [Ricinus communis]
7 Hb_106321_010 0.1522262797 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
8 Hb_005831_010 0.1541703909 - - hypothetical protein JCGZ_04003 [Jatropha curcas]
9 Hb_002960_010 0.1560270252 - - Zeamatin precursor, putative [Ricinus communis]
10 Hb_170878_070 0.1655173826 - - hypothetical protein EUGRSUZ_L008133, partial [Eucalyptus grandis]
11 Hb_001345_010 0.1690907528 - - hypothetical protein MIMGU_mgv1a010889mg [Erythranthe guttata]
12 Hb_009296_060 0.1713026422 - - glutathione s-transferase, putative [Ricinus communis]
13 Hb_002811_330 0.174238115 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
14 Hb_002984_040 0.1754226687 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_094148_010 0.1812838729 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
16 Hb_006269_030 0.1816873943 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
17 Hb_001358_120 0.182466144 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
18 Hb_001565_010 0.18342944 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
19 Hb_000705_090 0.1852106251 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
20 Hb_001186_120 0.1858256676 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_005614_030 Hb_005614_030 Hb_005168_030 Hb_005168_030 Hb_005614_030--Hb_005168_030 Hb_011440_010 Hb_011440_010 Hb_005614_030--Hb_011440_010 Hb_123560_020 Hb_123560_020 Hb_005614_030--Hb_123560_020 Hb_001366_050 Hb_001366_050 Hb_005614_030--Hb_001366_050 Hb_007676_040 Hb_007676_040 Hb_005614_030--Hb_007676_040 Hb_106321_010 Hb_106321_010 Hb_005614_030--Hb_106321_010 Hb_005168_030--Hb_106321_010 Hb_005168_030--Hb_123560_020 Hb_005168_030--Hb_011440_010 Hb_004586_110 Hb_004586_110 Hb_005168_030--Hb_004586_110 Hb_002960_010 Hb_002960_010 Hb_005168_030--Hb_002960_010 Hb_002003_030 Hb_002003_030 Hb_005168_030--Hb_002003_030 Hb_001300_140 Hb_001300_140 Hb_011440_010--Hb_001300_140 Hb_011440_010--Hb_123560_020 Hb_009150_060 Hb_009150_060 Hb_011440_010--Hb_009150_060 Hb_000753_180 Hb_000753_180 Hb_011440_010--Hb_000753_180 Hb_001358_120 Hb_001358_120 Hb_011440_010--Hb_001358_120 Hb_123560_020--Hb_106321_010 Hb_009486_120 Hb_009486_120 Hb_123560_020--Hb_009486_120 Hb_000336_280 Hb_000336_280 Hb_123560_020--Hb_000336_280 Hb_001186_120 Hb_001186_120 Hb_123560_020--Hb_001186_120 Hb_001366_050--Hb_011440_010 Hb_005333_210 Hb_005333_210 Hb_001366_050--Hb_005333_210 Hb_170878_070 Hb_170878_070 Hb_001366_050--Hb_170878_070 Hb_000457_130 Hb_000457_130 Hb_001366_050--Hb_000457_130 Hb_001366_050--Hb_001300_140 Hb_005542_040 Hb_005542_040 Hb_007676_040--Hb_005542_040 Hb_001345_010 Hb_001345_010 Hb_007676_040--Hb_001345_010 Hb_000501_110 Hb_000501_110 Hb_007676_040--Hb_000501_110 Hb_000108_090 Hb_000108_090 Hb_007676_040--Hb_000108_090 Hb_001634_080 Hb_001634_080 Hb_007676_040--Hb_001634_080 Hb_000521_360 Hb_000521_360 Hb_007676_040--Hb_000521_360 Hb_000215_420 Hb_000215_420 Hb_106321_010--Hb_000215_420 Hb_000705_090 Hb_000705_090 Hb_106321_010--Hb_000705_090 Hb_106321_010--Hb_011440_010 Hb_106321_010--Hb_002003_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150451 6.56738 22.8855 1.56889 0.0312351 0.0294975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.153566 0 0.108164 28.8378 12.473

CAGE analysis