Hb_170878_070

Information

Type -
Description -
Location Contig170878: 31207-37500
Sequence    

Annotation

kegg
ID pop:POPTR_0011s06120g
description hypothetical protein
nr
ID KCW45470.1
description hypothetical protein EUGRSUZ_L008133, partial [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A058ZWU1
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_L008133 PE=4 SV=1
Gene Ontology
ID GO:0004674
description probable leucine-rich repeat receptor-like serine threonine-protein kinase at3g14840

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15963: 34451-34755 , PASA_asmbl_15964: 35200-35659 , PASA_asmbl_15965: 35679-36833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170878_070 0.0 - - hypothetical protein EUGRSUZ_L008133, partial [Eucalyptus grandis]
2 Hb_001565_010 0.1100181016 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
3 Hb_094148_010 0.1156165034 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
4 Hb_004627_020 0.1223959307 - - Protein MLO, putative [Ricinus communis]
5 Hb_001186_120 0.1375003418 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
6 Hb_000215_130 0.1415150398 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
7 Hb_001366_050 0.1452963399 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2 [Populus euphratica]
8 Hb_011440_010 0.1460581103 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
9 Hb_009296_060 0.1464889529 - - glutathione s-transferase, putative [Ricinus communis]
10 Hb_003224_010 0.1471329042 - - -
11 Hb_001689_070 0.1527199066 - - cytochrome P450, putative [Ricinus communis]
12 Hb_001345_010 0.1528929324 - - hypothetical protein MIMGU_mgv1a010889mg [Erythranthe guttata]
13 Hb_002379_060 0.1538652858 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
14 Hb_001501_020 0.1565259752 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
15 Hb_134174_010 0.1578592794 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_001439_040 0.1615455787 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
17 Hb_001226_100 0.1617682611 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_007205_020 0.1626443218 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
19 Hb_000753_180 0.1627892554 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
20 Hb_005614_030 0.1655173826 - - PREDICTED: transcription factor SCREAM2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_170878_070 Hb_170878_070 Hb_001565_010 Hb_001565_010 Hb_170878_070--Hb_001565_010 Hb_094148_010 Hb_094148_010 Hb_170878_070--Hb_094148_010 Hb_004627_020 Hb_004627_020 Hb_170878_070--Hb_004627_020 Hb_001186_120 Hb_001186_120 Hb_170878_070--Hb_001186_120 Hb_000215_130 Hb_000215_130 Hb_170878_070--Hb_000215_130 Hb_001366_050 Hb_001366_050 Hb_170878_070--Hb_001366_050 Hb_000108_090 Hb_000108_090 Hb_001565_010--Hb_000108_090 Hb_001565_010--Hb_094148_010 Hb_000521_360 Hb_000521_360 Hb_001565_010--Hb_000521_360 Hb_001565_010--Hb_004627_020 Hb_001345_010 Hb_001345_010 Hb_001565_010--Hb_001345_010 Hb_001634_080 Hb_001634_080 Hb_001565_010--Hb_001634_080 Hb_094148_010--Hb_000108_090 Hb_003224_010 Hb_003224_010 Hb_094148_010--Hb_003224_010 Hb_094148_010--Hb_001634_080 Hb_000261_370 Hb_000261_370 Hb_094148_010--Hb_000261_370 Hb_008899_030 Hb_008899_030 Hb_004627_020--Hb_008899_030 Hb_009554_030 Hb_009554_030 Hb_004627_020--Hb_009554_030 Hb_011537_020 Hb_011537_020 Hb_004627_020--Hb_011537_020 Hb_000203_080 Hb_000203_080 Hb_004627_020--Hb_000203_080 Hb_001186_120--Hb_000215_130 Hb_001226_100 Hb_001226_100 Hb_001186_120--Hb_001226_100 Hb_000880_040 Hb_000880_040 Hb_001186_120--Hb_000880_040 Hb_004709_030 Hb_004709_030 Hb_001186_120--Hb_004709_030 Hb_009102_010 Hb_009102_010 Hb_001186_120--Hb_009102_010 Hb_000336_280 Hb_000336_280 Hb_001186_120--Hb_000336_280 Hb_000215_130--Hb_001226_100 Hb_000215_130--Hb_000336_280 Hb_000215_130--Hb_004709_030 Hb_005333_210 Hb_005333_210 Hb_000215_130--Hb_005333_210 Hb_001832_110 Hb_001832_110 Hb_000215_130--Hb_001832_110 Hb_011440_010 Hb_011440_010 Hb_001366_050--Hb_011440_010 Hb_005614_030 Hb_005614_030 Hb_001366_050--Hb_005614_030 Hb_001366_050--Hb_005333_210 Hb_000457_130 Hb_000457_130 Hb_001366_050--Hb_000457_130 Hb_001300_140 Hb_001300_140 Hb_001366_050--Hb_001300_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.29547 3.55625 0.915254 0 0.0393733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.127429 0.133646 0 4.29951 3.2428

CAGE analysis