Hb_094148_010

Information

Type -
Description -
Location Contig94148: 90-1977
Sequence    

Annotation

kegg
ID rcu:RCOM_0574930
description receptor serine/threonine kinase, putative
nr
ID XP_012066188.1
description PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
swissprot
ID P0CH01
description Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1
trembl
ID A0A067LE94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23767 PE=3 SV=1
Gene Ontology
ID GO:0016772
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094148_010 0.0 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
2 Hb_001565_010 0.0943871405 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
3 Hb_000108_090 0.1042789302 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
4 Hb_003224_010 0.1063979334 - - -
5 Hb_001634_080 0.1084044759 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000261_370 0.1131304667 - - -
7 Hb_170878_070 0.1156165034 - - hypothetical protein EUGRSUZ_L008133, partial [Eucalyptus grandis]
8 Hb_004627_020 0.1228966125 - - Protein MLO, putative [Ricinus communis]
9 Hb_005496_170 0.123561683 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
10 Hb_007676_040 0.1238719112 - - cellulose synthase, putative [Ricinus communis]
11 Hb_127661_010 0.133245672 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001345_010 0.1338510346 - - hypothetical protein MIMGU_mgv1a010889mg [Erythranthe guttata]
13 Hb_001501_020 0.1340480038 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
14 Hb_000289_100 0.1359388844 - - carbonyl reductase, putative [Ricinus communis]
15 Hb_007205_020 0.140131471 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
16 Hb_002503_050 0.1462179701 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
17 Hb_170878_050 0.146603689 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
18 Hb_000189_160 0.148147411 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
19 Hb_016637_020 0.1484567047 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
20 Hb_007113_020 0.1535918765 - - -

Gene co-expression network

sample Hb_094148_010 Hb_094148_010 Hb_001565_010 Hb_001565_010 Hb_094148_010--Hb_001565_010 Hb_000108_090 Hb_000108_090 Hb_094148_010--Hb_000108_090 Hb_003224_010 Hb_003224_010 Hb_094148_010--Hb_003224_010 Hb_001634_080 Hb_001634_080 Hb_094148_010--Hb_001634_080 Hb_000261_370 Hb_000261_370 Hb_094148_010--Hb_000261_370 Hb_170878_070 Hb_170878_070 Hb_094148_010--Hb_170878_070 Hb_001565_010--Hb_000108_090 Hb_000521_360 Hb_000521_360 Hb_001565_010--Hb_000521_360 Hb_004627_020 Hb_004627_020 Hb_001565_010--Hb_004627_020 Hb_001345_010 Hb_001345_010 Hb_001565_010--Hb_001345_010 Hb_001565_010--Hb_001634_080 Hb_000108_090--Hb_001634_080 Hb_107809_010 Hb_107809_010 Hb_000108_090--Hb_107809_010 Hb_005542_040 Hb_005542_040 Hb_000108_090--Hb_005542_040 Hb_007676_040 Hb_007676_040 Hb_000108_090--Hb_007676_040 Hb_000189_160 Hb_000189_160 Hb_003224_010--Hb_000189_160 Hb_005496_170 Hb_005496_170 Hb_003224_010--Hb_005496_170 Hb_000046_430 Hb_000046_430 Hb_003224_010--Hb_000046_430 Hb_009554_030 Hb_009554_030 Hb_003224_010--Hb_009554_030 Hb_002503_050 Hb_002503_050 Hb_003224_010--Hb_002503_050 Hb_001634_080--Hb_107809_010 Hb_001634_080--Hb_005542_040 Hb_127661_010 Hb_127661_010 Hb_001634_080--Hb_127661_010 Hb_170878_050 Hb_170878_050 Hb_001634_080--Hb_170878_050 Hb_001634_080--Hb_007676_040 Hb_000261_370--Hb_127661_010 Hb_007113_020 Hb_007113_020 Hb_000261_370--Hb_007113_020 Hb_029576_100 Hb_029576_100 Hb_000261_370--Hb_029576_100 Hb_000261_370--Hb_005496_170 Hb_000261_370--Hb_001634_080 Hb_016637_020 Hb_016637_020 Hb_000261_370--Hb_016637_020 Hb_170878_070--Hb_001565_010 Hb_170878_070--Hb_004627_020 Hb_001186_120 Hb_001186_120 Hb_170878_070--Hb_001186_120 Hb_000215_130 Hb_000215_130 Hb_170878_070--Hb_000215_130 Hb_001366_050 Hb_001366_050 Hb_170878_070--Hb_001366_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.616011 0.998235 0.285568 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0395453 0 0 1.09616 0.837909

CAGE analysis