Hb_008899_030

Information

Type -
Description -
Location Contig8899: 8522-11799
Sequence    

Annotation

kegg
ID tcc:TCM_015403
description Lipase class 3-related protein, putative
nr
ID XP_007039034.1
description Lipase class 3-related protein, putative [Theobroma cacao]
swissprot
ID Q680C0
description GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1
trembl
ID A0A061G105
description Lipase class 3-related protein, putative OS=Theobroma cacao GN=TCM_015403 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61553: 10234-10361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008899_030 0.0 - - Lipase class 3-related protein, putative [Theobroma cacao]
2 Hb_011537_020 0.1011464653 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
3 Hb_004627_020 0.108094502 - - Protein MLO, putative [Ricinus communis]
4 Hb_039022_020 0.1081555704 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
5 Hb_000261_420 0.1130775056 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
6 Hb_001018_080 0.1147034111 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011472_020 0.1213164874 - - PREDICTED: mucin-17-like [Jatropha curcas]
8 Hb_010417_100 0.1241595141 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
9 Hb_000840_050 0.1271968229 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
10 Hb_000096_210 0.1272635982 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
11 Hb_005276_220 0.1276848329 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
12 Hb_000203_080 0.1281110599 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
13 Hb_001300_180 0.1290163155 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
14 Hb_000403_110 0.1372344812 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
15 Hb_001318_120 0.137536031 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
16 Hb_006788_100 0.1420074981 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
17 Hb_005542_040 0.142619776 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
18 Hb_175758_010 0.1446581114 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
19 Hb_001565_010 0.1448037637 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
20 Hb_000108_090 0.1451493939 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]

Gene co-expression network

sample Hb_008899_030 Hb_008899_030 Hb_011537_020 Hb_011537_020 Hb_008899_030--Hb_011537_020 Hb_004627_020 Hb_004627_020 Hb_008899_030--Hb_004627_020 Hb_039022_020 Hb_039022_020 Hb_008899_030--Hb_039022_020 Hb_000261_420 Hb_000261_420 Hb_008899_030--Hb_000261_420 Hb_001018_080 Hb_001018_080 Hb_008899_030--Hb_001018_080 Hb_011472_020 Hb_011472_020 Hb_008899_030--Hb_011472_020 Hb_011537_020--Hb_001018_080 Hb_000739_160 Hb_000739_160 Hb_011537_020--Hb_000739_160 Hb_002307_010 Hb_002307_010 Hb_011537_020--Hb_002307_010 Hb_011537_020--Hb_004627_020 Hb_015306_010 Hb_015306_010 Hb_011537_020--Hb_015306_010 Hb_001565_010 Hb_001565_010 Hb_004627_020--Hb_001565_010 Hb_009554_030 Hb_009554_030 Hb_004627_020--Hb_009554_030 Hb_000203_080 Hb_000203_080 Hb_004627_020--Hb_000203_080 Hb_170878_070 Hb_170878_070 Hb_004627_020--Hb_170878_070 Hb_039022_020--Hb_011472_020 Hb_000096_210 Hb_000096_210 Hb_039022_020--Hb_000096_210 Hb_005542_040 Hb_005542_040 Hb_039022_020--Hb_005542_040 Hb_001318_120 Hb_001318_120 Hb_039022_020--Hb_001318_120 Hb_166009_010 Hb_166009_010 Hb_039022_020--Hb_166009_010 Hb_000840_050 Hb_000840_050 Hb_039022_020--Hb_000840_050 Hb_010417_100 Hb_010417_100 Hb_000261_420--Hb_010417_100 Hb_005467_010 Hb_005467_010 Hb_000261_420--Hb_005467_010 Hb_000261_420--Hb_011537_020 Hb_003879_020 Hb_003879_020 Hb_000261_420--Hb_003879_020 Hb_003142_060 Hb_003142_060 Hb_000261_420--Hb_003142_060 Hb_001018_080--Hb_002307_010 Hb_003842_010 Hb_003842_010 Hb_001018_080--Hb_003842_010 Hb_002811_020 Hb_002811_020 Hb_001018_080--Hb_002811_020 Hb_001018_080--Hb_000739_160 Hb_005276_220 Hb_005276_220 Hb_011472_020--Hb_005276_220 Hb_010519_020 Hb_010519_020 Hb_011472_020--Hb_010519_020 Hb_011472_020--Hb_001318_120 Hb_001421_010 Hb_001421_010 Hb_011472_020--Hb_001421_010 Hb_000403_110 Hb_000403_110 Hb_011472_020--Hb_000403_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.184205 0.210898 0.165502 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0226408 0 0.352125 0.142504

CAGE analysis